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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/phyx">Debian Med / phyx</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/commit/673e523aefa8f8d82684db11fbe39876383487e2">673e523a</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2019-09-13T01:50:15Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/phyx/commit/63f697814dc08d5b9afdcfc2cca9be964d945fa7">63f69781</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2019-09-13T01:50:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.0+ds'
Update to upstream version '1.0+ds'
with Debian dir ed9002a9cef6e3fd7cf7dbda3224c9ddf966ab74</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#db79865174a7f276c3c8b827cb49c919aa6a998d">
doc/Phyxed_Manual.aux
</a>
</li>
<li class="file-stats">
<a href="#391a65da1ec1c880d4c1b7b3f5b5d11ab6e216aa">
doc/Phyxed_Manual.pdf
</a>
</li>
<li class="file-stats">
<a href="#4d5709a5ba0c8c0597083ffde0707cc40bf4cf09">
doc/Phyxed_Manual.tex
</a>
</li>
<li class="file-stats">
<a href="#49df23e069b78a534b14d2841918824dddc91a6b">
src/Makefile.in
</a>
</li>
<li class="file-stats">
<a href="#edf28eca225f8a11cdead097bf188393245d0d4b">
src/TEST/test.fa
</a>
</li>
<li class="file-stats">
<a href="#2b75ef513573ea9b24d6f4e052725f9bc37bbafb">
src/comp_test.cpp
</a>
</li>
<li class="file-stats">
<a href="#48bed7fc5f59486bae1f44fc24674c5bbf19dd57">
src/concat.cpp
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</li>
<li class="file-stats">
<a href="#4aef0554645a3f1b55d7f0d60d0482769ac96ed0">
src/concat.h
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<li class="file-stats">
<a href="#e0110ce83b559a1301c4345d9c8b73e424c8e0f1">
src/log_manip.cpp
</a>
</li>
<li class="file-stats">
<a href="#aa94e8d389b29d8a4df03f466343a197adef7fc9">
src/main_bp.cpp
</a>
</li>
<li class="file-stats">
<a href="#78b1a2ec0ccc2fbd45baca2bca82e106d32bf60b">
src/main_concat.cpp
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</li>
<li class="file-stats">
<a href="#40fbc94f805b88bb42ce767c4719a3f3d2b89132">
src/main_consq.cpp
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</li>
<li class="file-stats">
<a href="#9c788786a480e52c0977d62f0c6540a97ecb9789">
src/main_log.cpp
</a>
</li>
<li class="file-stats">
<a href="#7dd0144a862dcda2f70e5bc1227e53fbe4e8c3b1">
src/main_lstr.cpp
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</li>
<li class="file-stats">
<a href="#9c632bfe5f226532430a4f182fa09508e14aa33e">
src/main_recode.cpp
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</li>
<li class="file-stats">
<a href="#95c8cbbd1e538d1d964cd8e30fbc955b2d715961">
src/main_rr.cpp
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<li class="file-stats">
<a href="#cdd40f09f570b2d1362dffec2424c8de2de82b76">
src/main_s2fa.cpp
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</li>
<li class="file-stats">
<a href="#50b351449d418ef2253c87d165a9dc3793742bbd">
src/main_s2nex.cpp
</a>
</li>
<li class="file-stats">
<a href="#f755a2843e6c00a186bf47757049657180e64922">
src/main_s2phy.cpp
</a>
</li>
<li class="file-stats">
<a href="#425198181c932bd6b487a71235af3ff631f866c0">
<span class="new-file">
+
src/main_t2nex.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#050afb7728274fc97a37ea629fbab6313409d93b">
src/node.cpp
</a>
</li>
<li class="file-stats">
<a href="#8445c956bc37301250f6f54285c0ac9b461bad6d">
src/pairwise_alignment.cpp
</a>
</li>
<li class="file-stats">
<a href="#84fc54cdc6922724016d05fed77258302b6bbc11">
src/recode.cpp
</a>
</li>
<li class="file-stats">
<a href="#bfa6b890e108f5f25221b7feffb36b29cfb8c459">
src/recode.h
</a>
</li>
<li class="file-stats">
<a href="#74319c4fc4146c90ea1241db53b5244096b5dab0">
src/run_tests.py
</a>
</li>
<li class="file-stats">
<a href="#8127a4026b39703bf20f89027097d062038f6c9d">
src/seq_gen.cpp
</a>
</li>
<li class="file-stats">
<a href="#bff61201e8123820e94c947033c85e749f357c5a">
src/seq_info.cpp
</a>
</li>
<li class="file-stats">
<a href="#c51b9bccece87337ba709ae84c4a2536d5a2cc7a">
src/seq_reader.cpp
</a>
</li>
<li class="file-stats">
<a href="#9d55a6f9aa1d8ad5c9fed26cd00b18770c483004">
src/seq_reader.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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