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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/2b5d5be36fbc3e0848628865416c8ddef3cdacdb">2b5d5be3</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-13T14:14:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.6.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/d1ab5a48482565b4d9b7c390e28b2248aafba875">d1ab5a48</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-13T14:15:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.6.0'
Update to upstream version '5.6.0'
with Debian dir 21ffb32d799781824d48f050a5c05f033d390888</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/6fa0695c16b7c1afcff54ea3190d992f723f58b5">6fa0695c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-13T14:15:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/7411d0bd63a3043b6785c15243cdae842b7862e3">7411d0bd</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-13T14:33:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove 0013-remove-duplicate-keyword-argument.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/0b4c3368bf8dc9505be9645b344ed09fe8cf1d89">0b4c3368</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-13T14:39:38Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add AutoPkgTests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/af3663f935c278d790534db9364e9d5e8029d7ea">af3663f9</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-14T14:05:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">skip test due to missing dep
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/99baddc76829b105d761bf5dbf8b0509ba64dfde">99baddc7</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-14T15:18:18Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a93800f494e087804c016fbdb4607cad81b91d6b">
.circleci/common.sh
</a>
</li>
<li class="file-stats">
<a href="#fd5da61396a8376845bee5cdf71aaf3c98a888ae">
.circleci/config.yml
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#45267e3a9556cafa9cb7b61dab7a3b6659e73aad">
CHANGELOG.rst
</a>
</li>
<li class="file-stats">
<a href="#cf9802e192b48f765b1b5c8268d550d89c933053">
debian/README.source
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#129f87da0c8d360881ba445e9228a00e19477a56">
<span class="deleted-file">
−
debian/patches/0013-remove-duplicate-keyword-argument.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
<span class="new-file">
+
debian/tests/control
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<span class="new-file">
+
debian/tests/run-unit-test
</span>
</a>
</li>
<li class="file-stats">
<a href="#0c5e606b8190495bf7dabc7b15d0135b72486926">
docs/executable.rst
</a>
</li>
<li class="file-stats">
<a href="#3c7246c0b371cfd3a475428be04706178ca01f0f">
docs/project_info/faq.rst
</a>
</li>
<li class="file-stats">
<a href="#dfeb7b6e739ba66056c1799c63a5a39c7698b59f">
docs/snakefiles/rules.rst
</a>
</li>
<li class="file-stats">
<a href="#7f695df9a93bb6d2f47c562fd1282181e830528b">
docs/tutorial/basics.rst
</a>
</li>
<li class="file-stats">
<a href="#cf170f1aad8eab1ea8f50709422e4eae4ebaf604">
<span class="new-file">
+
docs/tutorial/short.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#54c391de2500e0856c23737daf64f9d931569110">
environment.yml
</a>
</li>
<li class="file-stats">
<a href="#c2acba86d5ef7b186a3f54c5fcbfeeb889e18738">
misc/vim/syntax/snakemake.vim
</a>
</li>
<li class="file-stats">
<a href="#f260ed3781b67dee69207fce8cb0b9fcf0fff461">
snakemake-tutorial.html
</a>
</li>
<li class="file-stats">
<a href="#d366205d7cd679ff6d4a61f70728e92537101763">
snakemake/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#5e16cbeea010f59dbef52f8950f4873c94f39c7e">
snakemake/_version.py
</a>
</li>
<li class="file-stats">
<a href="#cc2e928f15e341aa118531053338930d0d215b9d">
snakemake/conda.py
</a>
</li>
<li class="file-stats">
<a href="#9821437dfb3fff8383b6066a2a3c7aa3f6712a32">
snakemake/dag.py
</a>
</li>
<li class="file-stats">
<a href="#1dba76c2cca537b789f8754f5ddbed5dc36c6dee">
snakemake/executors.py
</a>
</li>
<li class="file-stats">
<a href="#e933119c7503fe1d48ce0b0d37492388705f5808">
snakemake/io.py
</a>
</li>
<li class="file-stats">
<a href="#818384818c4671b8354b6eb98ee2bab61c015a74">
snakemake/jobs.py
</a>
</li>
<li class="file-stats">
<a href="#3b8110569f3a954f35bef1e287ed362ec60e9224">
snakemake/remote/gfal.py
</a>
</li>
<li class="file-stats">
<a href="#3065d4749c6410564a20007bd7748abfda7699f6">
snakemake/report/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#7b2e7c5590f914b1c99d6d779757cc4e2527cd59">
snakemake/report/report.html
</a>
</li>
<li class="file-stats">
<a href="#55752111e76e9d786fdb84c4e7fd9f6de5c67a24">
snakemake/rules.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<a href="https://salsa.debian.org/med-team/snakemake/compare/a1945ce7dbc14f4feccce5bf92ecd98015676647...99baddc76829b105d761bf5dbf8b0509ba64dfde">View it on GitLab</a>.
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