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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bedops">Debian Med / bedops</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bedops/commit/c13837fe4ed5113983a6fac3a21b4bee0239f22d">c13837fe</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-17T05:36:28Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">DEP3
</pre>
</li>
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<strong><a href="https://salsa.debian.org/med-team/bedops/commit/53aa8926a7e02c289c892bec11578e1f2323517f">53aa8926</a></strong>
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<span>by Andreas Tille</span>
<i>at 2019-09-17T05:36:28Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Commit refreshed patches
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#e4830b70c1241fbf253115a0a0a52e982d994ee9">
debian/patches/tests_use_installed_binaries.patch
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<li class="file-stats">
<a href="#e870ecbbb144b7f71499b53d84dfee6478841f42">
debian/patches/use_debian_libs
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<h4>Changes:</h4>
<li id="e4830b70c1241fbf253115a0a0a52e982d994ee9">
<a href="https://salsa.debian.org/med-team/bedops/compare/48d9a9352333acb5cffd3c0bfc29362dd583c5f2...53aa8926a7e02c289c892bec11578e1f2323517f#e4830b70c1241fbf253115a0a0a52e982d994ee9"><strong>debian/patches/tests_use_installed_binaries.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Shayan Doust</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2019-09-13 20:40:49 +0100</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: use the installed binaries instead of the locally generated ones</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">Index: bedops/tests/starch/Makefile</span>
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- bedops.orig/tests/starch/Makefile 2019-09-13 19:28:55.216495617 +0100</span></span>
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<br>
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<li id="e870ecbbb144b7f71499b53d84dfee6478841f42">
<a href="https://salsa.debian.org/med-team/bedops/compare/48d9a9352333acb5cffd3c0bfc29362dd583c5f2...53aa8926a7e02c289c892bec11578e1f2323517f#e870ecbbb144b7f71499b53d84dfee6478841f42"><strong>debian/patches/use_debian_libs</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ Last-Update: 2017-01-13</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="p">Forwarded: no</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/interfaces/src/data/starch/starchFileHelpers.c</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/interfaces/src/data/starch/starchFileHelpers.c</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="p">@@ -1<span class="idiff left right">78,7 +178</span>,7 @@</span> STARCH_gzip_deflate(FILE *source, FILE *</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -1<span class="idiff left right">94,7 +194</span>,7 @@</span> STARCH_gzip_deflate(FILE *source, FILE *</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> /* deflateInit2 allows creation of archive with gzip header, i.e. a gzip file */</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> /* cf. http://www.zlib.net/manual.html */</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> #ifdef __cplusplus</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -122,7 +122,7 @@ Forwarded: no</td>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/applications/bed/starch/src/starchcat.c</span></span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/applications/bed/starch/src/starchcat.c</span></span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="diff"><span class="p">@@ -<span class="idiff left right">5542,7 +5542</span>,7 @@</span> STARCHCAT2_setupGzipOutputStream(z_strea</span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="diff"><span class="p">@@ -<span class="idiff left right">6177,7 +6177</span>,7 @@</span> STARCHCAT2_setupGzipOutputStream(z_strea</span>
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126
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="diff"> /* cf. http://www.zlib.net/manual.html for level information */</span>
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128
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="diff"> #ifdef __cplusplus</span>
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