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<h3>
Sascha Steinbiss pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/augustus">Debian Med / augustus</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/3edf606c6e109eb22e19da6ced3ae3c772ec6ff1">3edf606c</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2019-09-18T20:53:25Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.3.3+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
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<li class="file-stats">
<a href="#4a09ec95f4c4abe338b8c88fd0d9a11d28595e76">
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+
Dockerfile-cgp-file
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<li class="file-stats">
<a href="#100ec2c01efdc34e2e09a37c064c9db51cfb1468">
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+
Dockerfile-cgp-mysql
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<li class="file-stats">
<a href="#a15a89d3baab76a22a6f629be80b662e1de3d2b0">
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+
Dockerfile-cgp-sqlite
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<li class="file-stats">
<a href="#0bf8e07cde43468bfe21b33d874b182669de855d">
HISTORY.TXT
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#98d3cd9e05f6330331b18627f3938d56ef79eed1">
<span class="new-file">
+
README-cgp.md
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<li class="file-stats">
<a href="#1e61cbf49d4c428cc1453b543f581d183ad3e88f">
<span class="deleted-file">
−
README-cgp.txt
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#17bd560ea1fb1dcf713cead95d3f15e6c5a50d9f">
auxprogs/bam2hints/Makefile
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<li class="file-stats">
<a href="#b66207961c4f2bfb17e9f9f147c284b2c8a2d413">
auxprogs/bam2hints/bam2hints.cc
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<li class="file-stats">
<a href="#ce64319b90f1192ec3897ebb0ef99b9c5a2caa7e">
auxprogs/bam2wig/Makefile
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<li class="file-stats">
<a href="#0de9c2470f48eb27ef3ee615e630d7190bba7bd2">
auxprogs/bam2wig/README.txt
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<li class="file-stats">
<a href="#028a4a58a7137b1a8770079486c26367a0378a07">
auxprogs/bam2wig/bam2wig.c
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<li class="file-stats">
<a href="#e43e3d8381d425f410ceab30708e6aeba9c029e8">
auxprogs/filterBam/src/filterBam.cc
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<li class="file-stats">
<a href="#863cac5f4adf6d7eae3f5fdf9fa1d17398992643">
auxprogs/filterBam/src/functions/MatePairs.cc
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<li class="file-stats">
<a href="#389fde01fbbe03c2bea6b2e222caa424ac467ef8">
auxprogs/filterBam/src/functions/PairednessCoverage.cc
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<li class="file-stats">
<a href="#cf8c0d38714253803cba3f671e11a8a5b5d7f655">
auxprogs/filterBam/src/functions/SingleAlignment.cc
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<li class="file-stats">
<a href="#b9a82acb3e647a7a45408990f49613ff27f31a64">
auxprogs/filterBam/src/functions/initOptions.cc
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<li class="file-stats">
<a href="#443a8bc0e2095955c6b083b1e8511552e3618bca">
auxprogs/filterBam/src/headers/filterBam.h
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<li class="file-stats">
<a href="#d3b3dd73f838c1806960f5bc21e3efc250d8b8ed">
auxprogs/homGeneMapping/README.TXT
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<li class="file-stats">
<a href="#427d2afd44b57217f5381479e7ddadbc3cb6b367">
auxprogs/homGeneMapping/include/bitmasking.hh
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<li class="file-stats">
<a href="#79f420641329bfcee5552803688f8f95a4b02abe">
auxprogs/homGeneMapping/include/gene.hh
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<li class="file-stats">
<a href="#427f76d4101073bd071eaeb076e7618929786f17">
auxprogs/homGeneMapping/include/genome.hh
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<li class="file-stats">
<a href="#9bf461b9727df0662dbddf4ad27efaf1c3671c0d">
auxprogs/homGeneMapping/include/projectio.hh
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<li class="file-stats">
<a href="#30016135d01943002bb23bc8ff7f120722cc9591">
auxprogs/homGeneMapping/include/sqliteDB.hh
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</li>
<li class="file-stats">
<a href="#24d0a6d53d2e5103622c45f2ed14415574e28454">
auxprogs/homGeneMapping/src/Makefile
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</li>
<li class="file-stats">
<a href="#1b7e7d38b0996868c5c5fddf6f8524ae0a6d1a63">
auxprogs/homGeneMapping/src/gene.cc
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</li>
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<h5>The diff was not included because it is too large.</h5>
</div>
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