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<h3>
Dylan Aïssi pushed to branch master
at <a href="https://salsa.debian.org/med-team/qtltools">Debian Med / qtltools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/commit/2d84eb7720ff579d047a68ee840bf00122e6b1ec">2d84eb77</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-09-30T20:06:45Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/commit/8ec37dbdb0dfde3e2b41c2638d8c7dee1f5be2b6">8ec37dbd</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-09-30T20:20:41Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/commit/5c497169934595dbbe8abd050da50eff88aee0b9">5c497169</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-09-30T20:47:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update my email address
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/commit/a1d12804075edbc51452cf95ab4208d6edc2f138">a1d12804</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-09-30T20:55:24Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/commit/fc172972c3a0ea4497d2771d656be5d7c048fcf4">fc172972</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-09-30T20:56:58Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bump Standards-Version to 4.4.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/commit/82110fc6abc19de3de468311dfe18254ddebb64c">82110fc6</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-09-30T20:58:18Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bump debhelper compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/commit/dc88f051146b1d5abf3244c813cbd9ff4df3daab">dc88f051</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-09-30T21:26:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace
</pre>
</li>
</ul>
<h4>8 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#9c508e350e985b45f6e268390caa2ba19fb622d9">
debian/patches/Makefile_config.patch
</a>
</li>
<li class="file-stats">
<a href="#ca357d26fe01ad9e1f46eeae8aea159fd2b9c3f3">
debian/patches/Spelling_error.patch
</a>
</li>
<li class="file-stats">
<a href="#a8acb8f92d9ad3c7a79974b1b126f9309361c653">
debian/patches/reproducible_build.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/qtltools/compare/1d8138d5343d0e3374046a59b41ecdbe1aea00f7...dc88f051146b1d5abf3244c813cbd9ff4df3daab#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">qtltools (1.2+dfsg-1) UNRELEASED; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * New upstream release.</span>
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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Update d/copyright.</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Bump Standards-Version to 4.4.1 (no changes needed).</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Bump debhelper compat 12.</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Dylan Aïssi <daissi@debian.org> Mon, 30 Sep 2019 22:04:06 +0200</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">qtltools (1.1+dfsg-3) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,7 +40,7 @@ qtltools (1.1+dfsg-2) unstable; urgency=medium</td>
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<td class="diff-line-num new_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext">qtltools (1.1+dfsg-1) unstable; urgency=medium</span>
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<td class="diff-line-num old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num old old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> * New upstram version</span>
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<td class="diff-line-num new old_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> * New upstr<span class="idiff left right">e</span>am version</span>
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<td class="diff-line-num old_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> * d/watch: version=4</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Mon, 16 Jan 2017 10:06:15 +0100</span>
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<a href="https://salsa.debian.org/med-team/qtltools/compare/1d8138d5343d0e3374046a59b41ecdbe1aea00f7...dc88f051146b1d5abf3244c813cbd9ff4df3daab#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">1</span></span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">2</span></span></pre>
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<a href="https://salsa.debian.org/med-team/qtltools/compare/1d8138d5343d0e3374046a59b41ecdbe1aea00f7...dc88f051146b1d5abf3244c813cbd9ff4df3daab#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Source: qtltools</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Uploaders: Dylan Aïssi <<span class="idiff left right">bob.dybian@gmail.com</span>></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Uploaders: Dylan Aïssi <<span class="idiff left right">daissi@debian.org</span>></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">1</span>~),</span>
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<td class="diff-line-num new old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">2</span>~),</span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> libblas-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> libboost-iostreams-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> libboost-program-options-dev,</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,7 +13,7 @@ Build-Depends: debhelper (>= 11~),</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> libhts-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> r-mathlib,</span>
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15
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> zlib1g-dev</span>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
16
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<td class="diff-line-num new_line old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2</span>.1</span>
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<td class="diff-line-num new old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">4</span>.1</span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/qtltools</span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/qtltools.git</span>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Homepage: https://qtltools.github.io/qtltools/</span>
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<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/qtltools/compare/1d8138d5343d0e3374046a59b41ecdbe1aea00f7...dc88f051146b1d5abf3244c813cbd9ff4df3daab#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,11 +8,15 @@ Files-Excluded: bin</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> obj</span>
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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10
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Files: *</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Copyright: 2016 Olivier Delaneau, Halit Ongen and Emmanouil T. Dermitzakis</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Copyright: 2016<span class="idiff left right">-2019</span> Olivier Delaneau, Halit Ongen and Emmanouil T. Dermitzakis</span>
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12
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">License: GPL-3+</span>
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13
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Files: src/mode_quan/quan_xxhash.cpp</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">Copyright: 2012-2016 Yann Collet (xxHash project - https://github.com/Cyan4973/xxHash)</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">License: BSD-2-clause</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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14
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Files: debian/*</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">Copyright: 2016<span class="idiff left right"> Dylan Aïssi <bob.dybian@gmail.com</span>></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">Copyright: 2016<span class="idiff left right">-2019 Dylan Aïssi <daissi@debian.org</span>></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">License: GPL-3+</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">License: GPL-3+</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,3 +36,28 @@ License: GPL-3+</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> On Debian systems, the full text of the GNU General Public License</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> version 3 can be found in `/usr/share/common-licenses/GPL-3'.</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">License: BSD-2-clause</span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> Redistribution and use in source and binary forms, with or without</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> modification, are permitted provided that the following conditions are</span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> met:</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> 1. Redistributions of source code must retain the above copyright</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> notice, this list of conditions and the following disclaimer.</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> 2. Redistributions in binary form must reproduce the above copyright</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> notice, this list of conditions and the following disclaimer listed</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT</span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE</span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></pre>
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<li id="9c508e350e985b45f6e268390caa2ba19fb622d9">
<a href="https://salsa.debian.org/med-team/qtltools/compare/1d8138d5343d0e3374046a59b41ecdbe1aea00f7...dc88f051146b1d5abf3244c813cbd9ff4df3daab#9c508e350e985b45f6e268390caa2ba19fb622d9"><strong>debian/patches/Makefile_config.patch</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Author: Dylan Aïssi</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Description: Configure the makefile for Debian packaging.</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 201<span class="idiff left right">6-11-02</span></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 201<span class="idiff left right">9-09-30</span></span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">--- a/Makefile</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="p">@@ -28,<span class="idiff left">7 +28,7 @@</span></span><span class="idiff right"> OFILE=$(shell for file in `find src -nam</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -28,<span class="idiff left right">11 +28,7 @@</span></span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> VPATH=$(shell for file in `find src -name *.cpp`; do echo $$(dirname $$file); done)</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"> #DEFAULT VERSION (I.E. UNIGE DESKTOP RELEASE VERSION)</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-all: desktop</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> #DEFAULT VERSION (SET UP THE VARIABLES IN THE BEGINING OF THE MAKEFILE)</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-all: CXXFLAG=$(CXXFLAG_REL) $(CXXFLAG_WRN)</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-all: IFLAG=-Ilib/OTools -Ilib -I$(RMATH_INC) -I$(HTSLD_INC) -I$(BOOST_INC)</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-all: LIB_FILES=$(RMATH_LIB)/libRmath.a $(HTSLD_LIB)/libhts.a $(BOOST_LIB)/libboost_iostreams.a $(BOOST_LIB)/libboost_program_options.a</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-all: LDFLAG=$(CXXFLAG_REL)</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-all: $(BFILE)</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+all: debian</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> #<span class="idiff left right">UNIGE DESKTOP RELEASE VERSION</span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> <span class="idiff left right">desktop: RMATH_INC=$(HOME)/Tools/R-3.2.2/src/include</span></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"><span class="p">@@ -<span class="idiff left">92,6 +92,14 @@</span></span><span class="idiff right"> mac-dbg: LIB_FILES=$(RMATH_LIB)/libRmath</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> #<span class="idiff left right">DEFAULT DEBUG VERSION (SET UP THE VARIABLES IN THE BEGINING OF THE MAKEFILE)</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> <span class="idiff left right">all-dbg: CXXFLAG=$(CXXFLAG_DBG) $(CXXFLAG_WRN)</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="p">@@ -<span class="idiff left right">129,6 +125,14 @@</span></span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"> mac-dbg: LDFLAG=$(CXXFLAG_DBG) -L /opt/local/lib</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"> mac-dbg: $(BFILE)</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"> </span>
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<a href="https://salsa.debian.org/med-team/qtltools/compare/1d8138d5343d0e3374046a59b41ecdbe1aea00f7...dc88f051146b1d5abf3244c813cbd9ff4df3daab#ca357d26fe01ad9e1f46eeae8aea159fd2b9c3f3"><strong>debian/patches/Spelling_error.patch</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Author: Dylan Aïssi</span></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Description: Fix spelling error.</span></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 201<span class="idiff left right">6-11-16</span></span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 201<span class="idiff left right">9-09-30</span></span></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="p">Forwarded: https://github.com/qtltools/qtltools/pull/3</span></span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">--- a/src/mode_fdensity/fdensity_main.cpp</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/mode_fdensity/fdensity_main.cpp</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="p">@@ -30,7 +30,7 @@</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"> boost::program_options::options_description opt_parameters ("\x1B[32mParameters\33[0m");</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"> opt_parameters.add_options()</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ("window", boost::program_options::value< int >()->default_value(1000000), "Window size arround TSS in bp.")</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ("window", boost::program_options::value< int >()->default_value(1000000), "Window size around TSS in bp.")</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"> ("bin", boost::program_options::value< int >()->default_value(1000), "Bin size in bp.");</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> D.option_descriptions.add(opt_files).add(opt_parameters);</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="p">@@ -49,7 +49,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> //---------------------</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> // 3. PRINT HELP/HEADER</span>
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<li id="a8acb8f92d9ad3c7a79974b1b126f9309361c653">
<a href="https://salsa.debian.org/med-team/qtltools/compare/1d8138d5343d0e3374046a59b41ecdbe1aea00f7...dc88f051146b1d5abf3244c813cbd9ff4df3daab#a8acb8f92d9ad3c7a79974b1b126f9309361c653"><strong>debian/patches/reproducible_build.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ Forwarded: TODO</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">--- a/Makefile</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="p">@@ -23,8 +23,8 @@</span><span class="idiff left right"> LIB_FLAGS=-Wl,-Bstatic -lz -lgsl -lblas</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -23,8 +23,8 @@</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> BFILE=bin/QTLtools</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> HFILE=$(shell find src -name *.h)</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> TFILE=$(shell find lib -name *.h)</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,4 +15,4 @@ Forwarded: TODO</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+OFILE=$(shell for file in `find src -name *.cpp | LC_ALL=C sort`; do echo obj/$$(basename $$file .cpp).o; done)</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"> VPATH=$(shell for file in `find src -name *.cpp`; do echo $$(dirname $$file); done)</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"> #DEFAULT VERSION (<span class="idiff left right">I.E. UNIGE DESKTOP RELEASE VERSION</span>)</span></pre>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> #DEFAULT VERSION (<span class="idiff left right">SET UP THE VARIABLES IN THE BEGINING OF THE MAKEFILE</span>)</span></pre>
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<a href="https://salsa.debian.org/med-team/qtltools/compare/1d8138d5343d0e3374046a59b41ecdbe1aea00f7...dc88f051146b1d5abf3244c813cbd9ff4df3daab#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,4 +18,3 @@ override_dh_auto_clean:</td>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">override_dh_install:</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> cd debian/upstream.example && find -type f | LC_ALL=C sort | tar -T - --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner -Jcvf examples.tar.xz</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> dh_install</span></pre>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"></span></pre>
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