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<h3>
Dylan Aïssi pushed to branch master
at <a href="https://salsa.debian.org/med-team/qtltools">Debian Med / qtltools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/commit/4fd8c8fc586d3ca53ddd5efcbccc342559a7311a">4fd8c8fc</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-09-30T06:23:01Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qtltools/commit/1d8138d5343d0e3374046a59b41ecdbe1aea00f7">1d8138d5</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-09-30T06:23:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.2+dfsg'
Update to upstream version '1.2+dfsg'
with Debian dir 769ced9082da2c555b8988b99fe0f54e6b1182d5</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#becabc3bc2c8b0c66349f2ba6660ea22659bd73e">
lib/OTools/residualizer.h
</a>
</li>
<li class="file-stats">
<a href="#434cf42602ec99b275978a52c15a3f8cdb0f5ebc">
lib/OTools/string_utils.h
</a>
</li>
<li class="file-stats">
<a href="#a6ac81c6b5d2c8f81157d40759b6d0f5f8bfdfff">
src/QTLtools.cpp
</a>
</li>
<li class="file-stats">
<a href="#f09347a7bd19a49c9458b333304b4386aec5e4ea">
src/common/data.h
</a>
</li>
<li class="file-stats">
<a href="#9812048ec3bb0d40f6c61f4933d69902b5f7d3b0">
src/common/filter.h
</a>
</li>
<li class="file-stats">
<a href="#7552e7df03818b6794912a84aab7128d16fbc2d2">
src/mode_cis/cis_data.h
</a>
</li>
<li class="file-stats">
<a href="#2299b2971b74265ffbd59cd8b495900c7de442fa">
src/mode_cis/cis_main.cpp
</a>
</li>
<li class="file-stats">
<a href="#4af8a8ebb7dc175bd66c9cbd699b5f27e8b5fdc2">
src/mode_cis/cis_nominal_pass.cpp
</a>
</li>
<li class="file-stats">
<a href="#bf7fbbdcbe00a8151de2c06f051722871789e12e">
src/mode_correct/correct_data.h
</a>
</li>
<li class="file-stats">
<a href="#9302e96ae6b66e438d5b99b39e1cac860dd5fad8">
src/mode_correct/correct_processing.cpp
</a>
</li>
<li class="file-stats">
<a href="#fa730e66abc7c559971ac44e38f58f4948d80f0d">
src/mode_correct/correct_read_covariates.cpp
</a>
</li>
<li class="file-stats">
<a href="#464ffa457fc90988924ad8431496e4ab0e356005">
src/mode_fdensity/fdensity_main.cpp
</a>
</li>
<li class="file-stats">
<a href="#1d06a47a0ec5a6a4040651808aeae9e1efd0ca5e">
src/mode_fdensity/fdensity_process.cpp
</a>
</li>
<li class="file-stats">
<a href="#8d390c627967c6f47188e98013263bac99109fe9">
src/mode_genrich/genrich_process.cpp
</a>
</li>
<li class="file-stats">
<a href="#eb9ac4e7b3a8f514ad782fead2df620b436e1e0c">
src/mode_genrich/genrich_read_phenotypes.cpp
</a>
</li>
<li class="file-stats">
<a href="#310f3ce29f5094b4d08c33ab31dde14bab6e80d6">
src/mode_genrich/genrich_read_reference_genotypes.cpp
</a>
</li>
<li class="file-stats">
<a href="#17b5221aa0c044b73a128cde24ce91588248050f">
<span class="new-file">
+
src/mode_gwas/gwas_analysis_pass.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#83098741e293bfee3a81c60174192222aad0dbe4">
<span class="new-file">
+
src/mode_gwas/gwas_data.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#4daa38458c15d6488de15cf0142783683a2612ff">
src/mode_quan/quan_management.cpp
→
src/mode_gwas/gwas_initilization.cpp
</a>
</li>
<li class="file-stats">
<a href="#1be0d70a6a10d7ed87a09bfd99b70e558b8c379c">
<span class="new-file">
+
src/mode_gwas/gwas_main.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#6b604400f60be7de1ef4bbd6fa08e7054542ea97">
<span class="new-file">
+
src/mode_gwas/gwas_managment.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#5afd67f09b6c305de62da5ba8e638c6d0304b909">
<span class="new-file">
+
src/mode_gwas/gwas_read_covariates.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#044c16f82d64d2857f92b47af6faeca611ecdccd">
<span class="new-file">
+
src/mode_gwas/gwas_read_phenotypes.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#282b7c0f61e5e92f6e9646735254a1767eeb49aa">
src/mode_match/match_process.cpp
</a>
</li>
<li class="file-stats">
<a href="#87425d4d1edc28bc671a59f83d39524f6c6b6777">
<span class="deleted-file">
−
src/mode_quan/quan_chunking.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#1d7713fe36e02b27d4e045c854324f2ca3a2e081">
src/mode_quan/quan_data.h
</a>
</li>
<li class="file-stats">
<a href="#4af1b2a8a4cf9e253c83d719b7430a4c7130265c">
src/mode_quan/quan_main.cpp
</a>
</li>
<li class="file-stats">
<a href="#5e9f996cdd4d3e703c9ab6dcaeb81c5e070d2c38">
<span class="deleted-file">
−
src/mode_quan/quan_printResults.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#4344f91ceab7bed2a17dcb574eb48250a9b4f487">
src/mode_quan/quan_readBAM.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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