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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/profnet">Debian Med / profnet</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/profnet/commit/3e9d345abc3084978b92ee2e139a51e26a7db9b3">3e9d345a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-03T09:45:07Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profnet/commit/d261b60054740ba68021b32c369abca7e0135923">d261b600</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-03T09:51:24Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.4.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profnet/commit/fb1b0496dabfca6703ec794aba85d18bb997a21a">fb1b0496</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-03T09:51:43Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profnet/commit/dd069c95bfe4ecfea5f68e9c6b4caa03e93cc911">dd069c95</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-03T09:51:44Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profnet/commit/cfb6cd386a9682d39b7eb85c2d92aaf455e86fc5">cfb6cd38</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-03T09:51:44Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use secure URI in Homepage field.
Fixes lintian: homepage-field-uses-insecure-uri
See https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html for more details.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profnet/commit/ee3c2d3d54f17e880d08dcb77bdf8f2de08910bd">ee3c2d3d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-03T09:51:44Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Contact, Name.</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profnet/commit/c5a792a3fcc114927ca77cfab6be57c94c8656b3">c5a792a3</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-03T09:51:44Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix a spelling typo
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/profnet/commit/dea8b73736ae90b732b1d13f727e34ec6153040b">dea8b737</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-03T09:53:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">hardening works, remove comment to the contrary
</pre>
</li>
</ul>
<h4>8 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
<span class="new-file">
+
debian/patches/spelling
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/profnet/compare/6790b341c7192ec4fa1cdafd34815ce2ee2533d7...dea8b73736ae90b732b1d13f727e34ec6153040b#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">profnet (1.0.22-7) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * debhelper-compat 12</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Standards-Version: 4.4.1</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Remove trailing whitespace in debian/changelog</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Remove trailing whitespace in debian/copyright</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Use secure URI in Homepage field.</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Set upstream metadata fields: Contact, Name.</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Fix a spelling typo</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Thu, 03 Oct 2019 11:45:07 +0200</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">profnet (1.0.22-6) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> * debhelper 11</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -29,11 +42,11 @@ profnet (1.0.22-3) unstable; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> * cme fix dpkg-control</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> * add example file and testsuite for profnet-prof</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> * same testsuite works for several other packages (profnet-chop, profnet-con,</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> profnet-isis, profnet-snapfun). Add debian/*.examples files for these<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> packages and add to debian/tests/control<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> profnet-isis, profnet-snapfun). Add debian/*.examples files for these</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> packages and add to debian/tests/control</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> * mention debian/examples/PROFacc_tst.jct in debian/copyright</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> * add debian/docs, debian/README.test</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> * change debian/docs to set of {package}.docs for packages profnet-chop,<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> * change debian/docs to set of {package}.docs for packages profnet-chop,</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> profnet-con, profnet-isis, profnet-snapfun, profnet-prof.</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<a href="https://salsa.debian.org/med-team/profnet/compare/6790b341c7192ec4fa1cdafd34815ce2ee2533d7...dea8b73736ae90b732b1d13f727e34ec6153040b#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<a href="https://salsa.debian.org/med-team/profnet/compare/6790b341c7192ec4fa1cdafd34815ce2ee2533d7...dea8b73736ae90b732b1d13f727e34ec6153040b#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,13 +5,13 @@ Uploaders: Guy Yachdav <gyachdav@rostlab.org>,</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 11~</span>),</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 12</span>),</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> gfortran,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> rsync</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2</span>.1</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">4</span>.1</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/profnet</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/profnet.git</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">Homepage: http://www.predictprotein.org/</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Homepage: http<span class="idiff left right">s</span>://www.predictprotein.org/</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Package: profnet-bval</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Architecture: any</span>
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<a href="https://salsa.debian.org/med-team/profnet/compare/6790b341c7192ec4fa1cdafd34815ce2ee2533d7...dea8b73736ae90b732b1d13f727e34ec6153040b#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,7 +9,7 @@ Copyright:</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> EMBL</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> CUBIC (Columbia University, NY, USA)</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> LION Biosciences (Heidelberg, DE)</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> .<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> Copyright (C) 2009-2011 by Laszlo Kajan <lkajan@rostlab.org></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> Technical University Munich (DE)</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> .</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,11 +34,11 @@ Copyright:</td>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> 2009-2013 L. Kajan <lkajan@rostlab.org> Laszlo Kajan <lkajan@rostlab.org> Technical University Munich (DE)</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">License: GPL-2+</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext">Comment:</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> Although file named PROFacc_test.jct is mentioned in upstream's src and<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> *_dir folders, namely, in command in RUN-special file, it wasn't present<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> in upstream.<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> Although file named PROFacc_test.jct is mentioned in upstream's src and</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> *_dir folders, namely, in command in RUN-special file, it wasn't present</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> in upstream.</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> It was found in `profphd` package's upstream src/prof/net/ folder and<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> It was found in `profphd` package's upstream src/prof/net/ folder and</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> inherits corresponding license.</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext">License: GPL-2+</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -46,12 +46,12 @@ License: GPL-2+</td>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> it under the terms of the GNU General Public License as published by</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> the Free Software Foundation, either version 2 of the License, or</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> (at your option) any later version.</span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> .<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> This program is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> GNU General Public License for more details.</span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> .<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> You should have received a copy of the GNU General Public License</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> along with this program. If not, see <http://www.gnu.org/licenses/>.</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> .</span>
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<a href="https://salsa.debian.org/med-team/profnet/compare/6790b341c7192ec4fa1cdafd34815ce2ee2533d7...dea8b73736ae90b732b1d13f727e34ec6153040b#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">hardening.patch</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">spelling</span></pre>
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<a href="https://salsa.debian.org/med-team/profnet/compare/6790b341c7192ec4fa1cdafd34815ce2ee2533d7...dea8b73736ae90b732b1d13f727e34ec6153040b#e4c19aed51618bf0c7ebd03189c67e422f84d4eb"><strong>debian/patches/spelling</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- profnet.orig/src-phd/phd.f</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ profnet/src-phd/phd.f</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">@@ -283,7 +283,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> WRITE(6,'(T2,70A1)')('*',ITER=1,70)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> WRITE(6,'(T2,A3)')'***'</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> WRITE(6,'(T2,3A1,T10,A,T30,A50)')('*',ITER=1,3),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- + 'An error occurred: the adressed HSSP file is empty.'</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ + 'An error occurred: the addressed HSSP file is empty.'</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> WRITE(6,'(T2,3A1,T10,A,T30,A50)')('*',ITER=1,3),</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> + 'Program has stopped consequently !'</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> WRITE(6,'(T2,A3)')'***'</span></pre>
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<a href="https://salsa.debian.org/med-team/profnet/compare/6790b341c7192ec4fa1cdafd34815ce2ee2533d7...dea8b73736ae90b732b1d13f727e34ec6153040b#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,6 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"># Uncomment this to turn on verbose mode.</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">#export DH_VERBOSE=1</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"># Somehow the hardening options are not propagated</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS = hardening=+all</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">%:</span>
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<a href="https://salsa.debian.org/med-team/profnet/compare/6790b341c7192ec4fa1cdafd34815ce2ee2533d7...dea8b73736ae90b732b1d13f727e34ec6153040b#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext"> - Author: Avner Schlessinger and Guy Yachdav and Burkhard Rost</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> Journal: Bioinformatics</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> Year: 2006 Apr 1</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> Volume: 22</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> Number: 7</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> Pages: 891-893</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> Title: "OPRFbval: predict flexible and rigid residues in proteins"</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> PMID: 16455751</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> DOI: 10.1093/bioinformatics/btl032</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> URL: https://academic.oup.com/bioinformatics/article/22/7/891/202796</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> ePrint: "https://academic.oup.com/bioinformatics/article-pdf/\</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> 22/7/891/523458/btl032.pdf"</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">- Author: Avner Schlessinger and Guy Yachdav and Burkhard Rost</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Journal: Bioinformatics</span>
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<td class="diff-line-num new old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Year: 2006 Apr 1</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Volume: 22</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> Number: 7</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> Pages: 891-893</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> Title: "OPRFbval: predict flexible and rigid residues in proteins"</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> PMID: 16455751</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> DOI: 10.1093/bioinformatics/btl032</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> URL: https://academic.oup.com/bioinformatics/article/22/7/891/202796</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> ePrint: "https://academic.oup.com/bioinformatics/article-pdf/22/7/891/523458/btl032.pdf"</span>
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14
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Registry:</span>
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<td class="diff-line-num old old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
15
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> - Name: OMICtools</span>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
16
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> Entry: OMICS_09791</span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> - Name: bio.tools</span>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
18
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> Entry: NA</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> - Name: SciCrunch</span>
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<td class="diff-line-num old old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
20
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> Entry: NA</span></pre>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">- Name: OMICtools</span>
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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> Entry: OMICS_09791</span>
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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">- Name: bio.tools</span>
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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> Entry: NA</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">- Name: SciCrunch</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> Entry: NA</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Name: profnet</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">Contact: assistant@rostlab.org</span></pre>
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