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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/hmmer">Debian Med / hmmer</a>
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<h4>
Commits:
</h4>
<ul>
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<strong><a href="https://salsa.debian.org/med-team/hmmer/commit/163ada50939ed97889a61cdfebdde3a7e4c88389">163ada50</a></strong>
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<span>by Andreas Tille</span>
<i>at 2019-10-08T08:22:50Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.4.1
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<strong><a href="https://salsa.debian.org/med-team/hmmer/commit/d0b4289f9858b4abc52746fd0819b9e63bbc9f0a">d0b4289f</a></strong>
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<span>by Andreas Tille</span>
<i>at 2019-10-08T08:22:55Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Submit.</pre>
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<strong><a href="https://salsa.debian.org/med-team/hmmer/commit/2c446696b70845de5a99261c38fc5152ae1e1571">2c446696</a></strong>
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<span>by Andreas Tille</span>
<i>at 2019-10-08T08:22:56Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove obsolete fields Name, Contact from debian/upstream/metadata.</pre>
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<h4>3 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/hmmer/compare/27ce1de6ced1e5d9a97919729b0b74759494c47d...2c446696b70845de5a99261c38fc5152ae1e1571#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">hmmer (3.2.1+dfsg-3) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Michael R. Crusoe ]</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * HMMER3 has long required SSE or Altivec/VMX instruction support and the</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> 3.2.1 release enforces this, so we will follow upstreams lead:</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,6 +12,11 @@ hmmer (3.2.1+dfsg-3) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Fixed some spelling errors; thanks lintian!</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Made autopkgtests more verbose</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> * Standards-Version: 4.4.1</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Submit.</span>
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> * Remove obsolete fields Name, Contact from debian/upstream/metadata.</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 24 Sep 2019 18:13:19 +0200</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">hmmer (3.2.1+dfsg-2) unstable; urgency=medium</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/hmmer/compare/27ce1de6ced1e5d9a97919729b0b74759494c47d...2c446696b70845de5a99261c38fc5152ae1e1571#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ Section: science</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="mosel"><span class="n" style="color: #333;">Priority</span><span class="p">:</span> <span class="n" style="color: #333;">optional</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="mosel"><span class="n" style="color: #333;">Build</span><span class="p">-</span><span class="n" style="color: #333;">Depends</span><span class="p">:</span> <span class="n" style="color: #333;">debhelper</span><span class="p">-</span><span class="n" style="color: #333;">compat</span> <span class="p">(=</span> <span class="m" style="color: #099;">12</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="mosel"> <span class="n" style="color: #333;">libdivsufsort</span><span class="p">-</span><span class="n" style="color: #333;">dev</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="mosel"><span class="n" style="color: #333;">Standards</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">4.4.<span class="idiff left right">0</span></span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="mosel"><span class="n" style="color: #333;">Standards</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">4.4.<span class="idiff left right">1</span></span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"><span class="n" style="color: #333;">Vcs</span><span class="p">-</span><span class="n" style="color: #333;">Browser</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">hmmer</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"><span class="n" style="color: #333;">Vcs</span><span class="p">-</span><span class="n" style="color: #333;">Git</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">hmmer</span><span class="p">.</span><span class="n" style="color: #333;">git</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="mosel"><span class="n" style="color: #333;">Homepage</span><span class="p">:</span> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">hmmer</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span></span>
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<a href="https://salsa.debian.org/med-team/hmmer/compare/27ce1de6ced1e5d9a97919729b0b74759494c47d...2c446696b70845de5a99261c38fc5152ae1e1571#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Contact: http://selab.janelia.org/people/eddys/contact.html</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Name: HMMER</span>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"><span class="idiff left right"> </span>- Author: S. R. Eddy</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> <span class="idiff left right"> </span>Title: Profile hidden Markov models</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> <span class="idiff left right"> </span>Journal: Bioinformatics</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> <span class="idiff left right"> </span>Volume: 14</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> <span class="idiff left right"> </span>Number: 9</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> <span class="idiff left right"> </span>Pages: 755-763</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> <span class="idiff left right"> </span>Year: 1998</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> <span class="idiff left right"> </span>DOI: 10.1093/bioinformatics/14.9.755</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> <span class="idiff left right"> </span>PMID: 9918945</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right"> </span>URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/14/9/755</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> <span class="idiff left right"> </span>eprint: ></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">- Author: S. R. Eddy</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Title: Profile hidden Markov models</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Journal: Bioinformatics</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Volume: 14</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> Number: 9</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> Pages: 755-763</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> Year: 1998</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> DOI: 10.1093/bioinformatics/14.9.755</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> PMID: 9918945</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/14/9/755</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> eprint: ></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> http://bioinformatics.oxfordjournals.org/content/14/9/755.full.pdf+html</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> - Author: S. R. Eddy</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> Title: Multiple Alignment Using Hidden Markov Models</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> Journal: Proc. Third Int. Conf. Intelligent Systems for Molecular Biology</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> Volume: 3</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> Pages: 114-120</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> Year: 1995</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> PMID: 7584426</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> URL: "http://www.mendeley.com/research/\</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> multiple-alignment-using-hidden-markov-models-1/"</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> Eprint: ftp://selab.janelia.org/pub/publications/Eddy95b/Eddy95b-preprint.pdf</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">- Author: S. R. Eddy</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> Title: Multiple Alignment Using Hidden Markov Models</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> Journal: Proc. Third Int. Conf. Intelligent Systems for Molecular Biology</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> Volume: 3</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> Pages: 114-120</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> Year: 1995</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> PMID: 7584426</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> URL: "http://www.mendeley.com/research/multiple-alignment-using-hidden-markov-models-1/"</span>
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> Eprint: ftp://selab.janelia.org/pub/publications/Eddy95b/Eddy95b-preprint.pdf</span>
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26
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<td class="diff-line-num new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Registry:</span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> - Name: SciCrunch</span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> Entry: SCR_005305</span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> - Name: bio.tools</span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> Entry: HMMER3</span>
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<td class="diff-line-num old old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> - Name: OMICtools</span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> Entry: OMICS_00996</span>
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<td class="diff-line-num old old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> - Name: conda:bioconda</span>
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34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> Entry: hmmer</span></pre>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">- Name: SciCrunch</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> Entry: SCR_005305</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">- Name: bio.tools</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> Entry: HMMER3</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">- Name: OMICtools</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> Entry: OMICS_00996</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">- Name: conda:bioconda</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> Entry: hmmer</span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">Bug-Submit: sean@eddylab.org</span></pre>
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