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<h3>
Sascha Steinbiss pushed to branch master
at <a href="https://salsa.debian.org/med-team/rna-star">Debian Med / rna-star</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/021e04f5e344960f0169a5f5ce48d75982a90ca8">021e04f5</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2019-10-09T22:24:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.7.3a+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/615ae1b4fc174ea97b0d7a2441a2ae3aee6a91f9">615ae1b4</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2019-10-09T22:24:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.7.3a+dfsg'
Update to upstream version '2.7.3a+dfsg'
with Debian dir 8dfdb9b1dd653b807355644a8e331c37e9cc20d2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/01d5795db238ac8a6cf9694cec1201b93d00b2e2">01d5795d</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2019-10-09T22:51:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">new upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/70d4f9922ea279e270379dc19130783bacfbf816">70d4f992</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2019-10-09T22:51:18Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refresh patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/eceb928b4a8825859c04539fbc8f79332d7bab13">eceb928b</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2019-10-09T22:51:30Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">bump Standards-Version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/82d188649a0dec518088e8e07db5d63c08f61df4">82d18864</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2019-10-09T22:51:41Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">use debhelper 12
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#fb1b39277cfb15327cea71551d0bbf7643e216f4">
RELEASEnotes.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#e15fe6a3aa4284cb8b1685bd77b426cd5fbd7737">
debian/patches/donotuse_own_htslib.patch
</a>
</li>
<li class="file-stats">
<a href="#1d6ebb42152a3125296c8f3df8bc34651da72448">
doc/STARmanual.pdf
</a>
</li>
<li class="file-stats">
<a href="#0e92e2511c1a55ce1db2a846d4399f9fe68a71fe">
docs/STARsolo.md
</a>
</li>
<li class="file-stats">
<a href="#5a5668ccb427693fe0e7ea2e054229206cb91b0a">
extras/doc-latex/STARmanual.tex
</a>
</li>
<li class="file-stats">
<a href="#dd357fd519066773532862e75ebb9276945c8fe5">
extras/doc-latex/parametersDefault.tex
</a>
</li>
<li class="file-stats">
<a href="#8955c7301dc01c7f9b2a350f2aee6066e91f8f83">
extras/docker/Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#35c4bce952cca0e03458ee894864c9a09415d6ff">
<span class="new-file">
+
source/AlignVsTranscript.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#1e5b4c1f1f6aa726b81044bc456a57d6b5ae614b">
source/BAMbinSortByCoordinate.cpp
</a>
</li>
<li class="file-stats">
<a href="#0bfc5dadaef4162ef4b080e49e79924e556dfb93">
source/BAMbinSortByCoordinate.h
</a>
</li>
<li class="file-stats">
<a href="#2ae4914dbcb1efeb17d11c457772c8c2308eb7c1">
source/BAMbinSortUnmapped.cpp
</a>
</li>
<li class="file-stats">
<a href="#836ceb88a596b10c7fb50d8a95ca462dc35804a4">
source/BAMbinSortUnmapped.h
</a>
</li>
<li class="file-stats">
<a href="#05aaea645830f1788b63f5f6c2c90809c8837dee">
source/BAMfunctions.cpp
</a>
</li>
<li class="file-stats">
<a href="#600ad8c4e58f1054cd15a867a5d5ee15abb7c2f2">
source/BAMfunctions.h
</a>
</li>
<li class="file-stats">
<a href="#c59c8bb3fa90e4308e2e45749884917ca1d7954d">
source/BAMoutput.cpp
</a>
</li>
<li class="file-stats">
<a href="#a0b6c92785c5892df94b89d21ead0dc460541d74">
source/IncludeDefine.h
</a>
</li>
<li class="file-stats">
<a href="#6ae9e88712056a2abd55911f4d3a7d8b8145819c">
source/Makefile
</a>
</li>
<li class="file-stats">
<a href="#6e7e9199db44be8b0f606c7c21db10763fc8b0eb">
source/Parameters.cpp
</a>
</li>
<li class="file-stats">
<a href="#09b38547a28087b813616bd2a7334493c3862c48">
source/Parameters.h
</a>
</li>
<li class="file-stats">
<a href="#f09ea75b8243d42eee54c10d49465997ac00609f">
source/ParametersChimeric_initialize.cpp
</a>
</li>
<li class="file-stats">
<a href="#bf27f52254916f0127a15b2aa4242b8679bb9815">
source/ParametersSolo.cpp
</a>
</li>
<li class="file-stats">
<a href="#924480e837c06acd1472c069adb0bb8cae0b6bc1">
source/ParametersSolo.h
</a>
</li>
<li class="file-stats">
<a href="#238ae46f3e2ae6c05a1eca3f159a54222230394e">
source/ReadAlign.h
</a>
</li>
<li class="file-stats">
<a href="#7245d12cb1ad9b44f08daa0ab3e702d4bed39531">
source/ReadAlignChunk_processChunks.cpp
</a>
</li>
<li class="file-stats">
<a href="#764c3cfc36fad2f293fd356112b8836ea61e0b02">
source/ReadAlign_alignBAM.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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