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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/purple">Debian Med / purple</a>
</h3>
<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/purple/commit/3eb485e6ec907542e67e916ac190d53e51e21423">3eb485e6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-10-10T11:46:24Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Polish packaging - not finished yet!
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<h4>5 changed files:</h4>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
<span class="new-file">
+
debian/docs
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</a>
</li>
<li class="file-stats">
<a href="#68d8c5c6babbf5cf109b2584c454449dbff75772">
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+
debian/install
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<li class="file-stats">
<a href="#8349ebd0c596ef9478eb284b6a482b10861b7531">
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debian/links
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/purple/commit/3eb485e6ec907542e67e916ac190d53e51e21423#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,8 @@ Section: science</td>
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 12),</span>
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> dh-python,</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> python3</span>
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<td class="diff-line-num new old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> python3,</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> markdown</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Standards-Version: 4.4.1</span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/purple</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/purple.git</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,11 +33,13 @@ Description: Picking Unique Relevant Peptides for viraL Experiments</td>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> for viraL Experiments) is a software tool for selecting target-specific</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> peptide candidates directly from given proteome sequence data.</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> Purple comes with an intuitive graphical user interface, various</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> parameter options and a threshold-based filtering strategy for</span>
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<td class="diff-line-num new new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> homologous sequences.</span>
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<td class="diff-line-num new new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> Purple enables peptide candidate selection across various taxonomic</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> levels and filtering against backgrounds of varying complexity. Its</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> functionality is demonstrated using data from different virus species</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> and strains. Purple enables building taxon-specific targeted assays</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> and paves the way to time-efficient and robust viral diagnostics using</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> targeted proteomics.</span></pre>
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41
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> .</span>
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42
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> This is the command line version of purple.</span></pre>
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<a href="https://salsa.debian.org/med-team/purple/commit/3eb485e6ec907542e67e916ac190d53e51e21423#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32"><strong>debian/docs</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">README.html</span></pre>
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<a href="https://salsa.debian.org/med-team/purple/commit/3eb485e6ec907542e67e916ac190d53e51e21423#68d8c5c6babbf5cf109b2584c454449dbff75772"><strong>debian/install</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">src/*.py usr/share/purple</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">src/icon usr/share/purple</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">src/config* usr/share/purple</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span></pre>
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<a href="https://salsa.debian.org/med-team/purple/commit/3eb485e6ec907542e67e916ac190d53e51e21423#8349ebd0c596ef9478eb284b6a482b10861b7531"><strong>debian/links</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">usr/share/purple/Purple_GUI.py usr/bin/Purple_GUI.py</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">usr/share/purple/Purple_Main.py usr/bin/Purple_Main.py</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">usr/share/purple/Purple__methods.py usr/bin/Purple_methods.py</span></pre>
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<a href="https://salsa.debian.org/med-team/purple/commit/3eb485e6ec907542e67e916ac190d53e51e21423#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,4 +3,14 @@</td>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"># DH_VERBOSE := 1</span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">%:</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> dh $@</span></pre>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> dh $@ --with python3</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">override_dh_installdocs:</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> for md in *.md ; do \</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> markdown $${md} > `basename $${md} .md`.html ; \</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> done</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dh_installdocs</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> rm *.html</span>
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<td class="diff-line-num new old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">override_dh_python3:</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> dh_python3 --shebang=/usr/bin/python3</span></pre>
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