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GitLab

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<h3>

Michael R. Crusoe pushed to branch master

at <a href="https://salsa.debian.org/med-team/ngs-sdk">Debian Med / ngs-sdk</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/ngs-sdk/commit/059bf68fbcc6ac7d9a49c1d32aa4c828c43edeb7">059bf68f</a></strong>

<div>

<span>by Frédéric Bonnard</span>

<i>at 2019-10-11T13:46:24Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add support for other architectures based on gcc atomic built-ins (Closes: #813559)

This is based on the existing win/atomic32.h modified with gcc atomic built-ins.

Each unknown architecture in the configuration scripts still needs to be

added.

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/ngs-sdk/commit/2253b8d4be16a03b93ce35725a386af21fe72f3a">2253b8d4</a></strong>

<div>

<span>by Frédéric Bonnard</span>

<i>at 2019-10-11T13:46:32Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Enable ppc64/ppc64el in configuration scripts

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/ngs-sdk/commit/bc239fe9c79c6e862aa0cc4e43bb0d9b9a8d6748">bc239fe9</a></strong>

<div>

<span>by Michael R. Crusoe</span>

<i>at 2019-10-12T06:59:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'enable-ppc64-ppc64el-and-possibly-others' into 'master'

Enable ppc64 ppc64el and possibly others

See merge request med-team/ngs-sdk!1</pre>

</li>

</ul>

<h4>5 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#8f05d2a1c695404d03ff016cd09906f43e75402b">

<span class="new-file">

+

debian/atomic32.h

</span>

</a>

</li>

<li class="file-stats">

<a href="#c8e9bbc0cac96d779f2027b1593e9b692d75cf44">

<span class="new-file">

+

debian/patches/enable-ppc64el.patch

</span>

</a>

</li>

<li class="file-stats">

<a href="#5fa987681733f3fac1ce3ce91d2821213dcf0f8d">

<span class="new-file">

+

debian/patches/fallback-on-generic-atomic32.patch

</span>

</a>

</li>

<li class="file-stats">

<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">

debian/patches/series

</a>

</li>

<li class="file-stats">

<a href="#8756c63497c8dc39f7773438edf53b220c773f67">

debian/rules

</a>

</li>

</ul>

<h4>Changes:</h4>

<li id="8f05d2a1c695404d03ff016cd09906f43e75402b">

<a href="https://salsa.debian.org/med-team/ngs-sdk/compare/7aacb2e730139b19dcfcd794ed8d058a3e771c32...bc239fe9c79c6e862aa0cc4e43bb0d9b9a8d6748#8f05d2a1c695404d03ff016cd09906f43e75402b"><strong>debian/atomic32.h</strong></a>

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1

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/*===========================================================================</span></span>

</pre>

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2

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*</span></span>

</pre>

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3

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*                            PUBLIC DOMAIN NOTICE</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

4

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<pre style="margin: 0;">+<span id="LC4" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*               National Center for Biotechnology Information</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

5

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<pre style="margin: 0;">+<span id="LC5" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

6

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<pre style="margin: 0;">+<span id="LC6" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  This software/database is a "United States Government Work" under the</span></span>

</pre>

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7

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  terms of the United States Copyright Act.  It was written as part of</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

8

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<pre style="margin: 0;">+<span id="LC8" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  the author's official duties as a United States Government employee and</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

9

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  thus cannot be copyrighted.  This software/database is freely available</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC10" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  to the public for use. The National Library of Medicine and the U.S.</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC11" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  Government have not placed any restriction on its use or reproduction.</span></span>

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<pre style="margin: 0;">+<span id="LC12" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC13" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  Although all reasonable efforts have been taken to ensure the accuracy</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC14" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  and reliability of the software and data, the NLM and the U.S.</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC15" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  Government do not and cannot warrant the performance or results that</span></span>

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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC16" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  may be obtained by using this software or data. The NLM and the U.S.</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC17" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  Government disclaim all warranties, express or implied, including</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC18" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  warranties of performance, merchantability or fitness for any particular</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

19

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<pre style="margin: 0;">+<span id="LC19" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  purpose.</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC20" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

21

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<pre style="margin: 0;">+<span id="LC21" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*  Please cite the author in any work or product based on this material.</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

22

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<pre style="margin: 0;">+<span id="LC22" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC23" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">* ===========================================================================</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC24" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC25" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*/</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC26" class="line" lang="c"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC27" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifndef _h_ngs_engine_atomic32_</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC28" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define _h_ngs_engine_atomic32_</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC29" class="line" lang="c"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC30" class="line" lang="c"><span class="k" style="font-weight: 600;">typedef</span> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">atomic32_t</span> <span class="n" style="color: #333;">atomic32_t</span><span class="p">;</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC31" class="line" lang="c"><span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">atomic32_t</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC32" class="line" lang="c"><span class="p">{</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC33" class="line" lang="c">    <span class="k" style="font-weight: 600;">volatile</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">counter</span><span class="p">;</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

34

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<pre style="margin: 0;">+<span id="LC34" class="line" lang="c"><span class="p">};</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

35

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<pre style="margin: 0;">+<span id="LC35" class="line" lang="c"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC36" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __cplusplus</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC37" class="line" lang="c"><span class="k" style="font-weight: 600;">extern</span> <span class="s" style="color: #d14;">"C"</span> <span class="p">{</span></span>

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<pre style="margin: 0;">+<span id="LC38" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>

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<pre style="margin: 0;">+<span id="LC39" class="line" lang="c"></span>

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<pre style="margin: 0;">+<span id="LC40" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* int atomic32_read ( const atomic32_t *v ); */</span></span>

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<pre style="margin: 0;">+<span id="LC41" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define atomic32_read( v ) \</span></span>

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<pre style="margin: 0;">+<span id="LC42" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">    ( ( v ) -> counter )</span></span>

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<pre style="margin: 0;">+<span id="LC43" class="line" lang="c"></span>

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<pre style="margin: 0;">+<span id="LC44" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* void atomic32_set ( atomic32_t *v, int i ); */</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC45" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define atomic32_set( v, i ) \</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC46" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">    ( ( void ) ( ( ( v ) -> counter ) = ( i ) ) )</span></span>

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<pre style="margin: 0;">+<span id="LC47" class="line" lang="c"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC48" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* add to v -> counter and return the prior value */</span></span>

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<pre style="margin: 0;">+<span id="LC49" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* int atomic32_read_and_add ( atomic32_t *v, int i ) */</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC50" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define atomic32_read_and_add( v, i ) \</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC51" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">    __sync_fetch_and_add ( ( volatile unsigned int * ) & ( v ) -> counter, ( i ) )</span></span>

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<pre style="margin: 0;">+<span id="LC52" class="line" lang="c"></span>

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<pre style="margin: 0;">+<span id="LC53" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* void atomic32_dec ( atomic32_t *v ) */</span></span>

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<pre style="margin: 0;">+<span id="LC54" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define atomic32_dec( v ) \</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC55" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">    __sync_sub_and_fetch ( ( volatile unsigned int * ) & ( v ) -> counter, 1 )</span></span>

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<pre style="margin: 0;">+<span id="LC56" class="line" lang="c"></span>

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<pre style="margin: 0;">+<span id="LC57" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* int atomic32_test_and_set ( atomic32_t *v, int s, int t ) */</span></span>

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<pre style="margin: 0;">+<span id="LC58" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define atomic32_test_and_set( v, s, t ) \</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC59" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">    __sync_val_compare_and_swap ( ( volatile unsigned int * ) & ( v ) -> counter, ( t ), ( s ) )</span></span>

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<pre style="margin: 0;">+<span id="LC60" class="line" lang="c"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC61" class="line" lang="c"><span class="k" style="font-weight: 600;">static</span> <span class="kr" style="font-weight: 600;">__inline</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">atomic32_read_and_add_gt</span> <span class="p">(</span> <span class="n" style="color: #333;">atomic32_t</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">t</span> <span class="p">)</span></span>

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<pre style="margin: 0;">+<span id="LC62" class="line" lang="c"><span class="p">{</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC63" class="line" lang="c">     <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">val</span><span class="p">,</span> <span class="n" style="color: #333;">val_intern</span><span class="p">;</span></span>

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<pre style="margin: 0;">+<span id="LC64" class="line" lang="c">     <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">atomic32_read</span> <span class="p">(</span> <span class="n" style="color: #333;">v</span> <span class="p">);</span> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">t</span><span class="p">;</span> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">val_intern</span> <span class="p">)</span></span>

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<pre style="margin: 0;">+<span id="LC65" class="line" lang="c">     <span class="p">{</span></span>

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<pre style="margin: 0;">+<span id="LC66" class="line" lang="c">             <span class="n" style="color: #333;">val_intern</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">atomic32_test_and_set</span> <span class="p">(</span> <span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">val</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">val</span> <span class="p">);</span></span>

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<pre style="margin: 0;">+<span id="LC67" class="line" lang="c">             <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">val_intern</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">val</span> <span class="p">)</span></span>

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<pre style="margin: 0;">+<span id="LC68" class="line" lang="c">                     <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>

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<pre style="margin: 0;">+<span id="LC69" class="line" lang="c">     <span class="p">}</span></span>

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<pre style="margin: 0;">+<span id="LC70" class="line" lang="c">     <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">val</span><span class="p">;</span></span>

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<pre style="margin: 0;">+<span id="LC71" class="line" lang="c"><span class="p">}</span></span>

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<pre style="margin: 0;">+<span id="LC72" class="line" lang="c"></span>

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<pre style="margin: 0;">+<span id="LC73" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __cplusplus</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC74" class="line" lang="c"><span class="p">}</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC75" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>

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<pre style="margin: 0;">+<span id="LC76" class="line" lang="c"></span>

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<pre style="margin: 0;">+<span id="LC77" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif </span><span class="cm" style="color: #998; font-style: italic;">/* _h_ngs_engine_atomic32_ */</span></span></pre>

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<br>

</li>

<li id="c8e9bbc0cac96d779f2027b1593e9b692d75cf44">

<a href="https://salsa.debian.org/med-team/ngs-sdk/compare/7aacb2e730139b19dcfcd794ed8d058a3e771c32...bc239fe9c79c6e862aa0cc4e43bb0d9b9a8d6748#c8e9bbc0cac96d779f2027b1593e9b692d75cf44"><strong>debian/patches/enable-ppc64el.patch</strong></a>

<hr>

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Enable ppc64 and ppc64el</span></span>

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Handle those architectures in the configuration scripts.</span></span>

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Author: Frédéric Bonnard <frediz@debian.org></span></span>

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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/ngs-bam/setup/os-arch.prl</span></span>

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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/ngs-bam/setup/os-arch.prl</span></span>

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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">@@ -55,6 +55,9 @@</span></span>

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">             } elsif ($MARCH =~ /sun4v/) {</span>

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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff">                 $HOST_ARCH = 'sparc64';</span>

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff">                 @ARCHITECTURES = qw(sparc64 sparc32);</span>

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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            } elsif ($MARCH =~ /ppc64/) {</span></span>

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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+                $HOST_ARCH = $MARCH;</span></span>

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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+                @ARCHITECTURES = qw(ppc64 ppc64le);</span></span>

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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff">             } else {</span>

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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff">                 $HOST_ARCH = $MARCH;</span>

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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff">             }</span>

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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/ngs-java/setup/os-arch.prl</span></span>

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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/ngs-java/setup/os-arch.prl</span></span>

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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="p">@@ -55,6 +55,9 @@</span></span>

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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff">             } elsif ($MARCH =~ /sun4v/) {</span>

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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff">                 $HOST_ARCH = 'sparc64';</span>

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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff">                 @ARCHITECTURES = qw(sparc64 sparc32);</span>

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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            } elsif ($MARCH =~ /ppc64/) {</span></span>

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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+                $HOST_ARCH = $MARCH;</span></span>

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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+                @ARCHITECTURES = qw(ppc64 ppc64le);</span></span>

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<td class="diff-line-num new new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff">             } else {</span>

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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff">                 $HOST_ARCH = $MARCH;</span>

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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff">             }</span>

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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/ngs-python/setup/os-arch.prl</span></span>

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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/ngs-python/setup/os-arch.prl</span></span>

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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="p">@@ -55,6 +55,9 @@</span></span>

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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff">             } elsif ($MARCH =~ /sun4v/) {</span>

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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff">                 $HOST_ARCH = 'sparc64';</span>

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<td class="diff-line-num new new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff">                 @ARCHITECTURES = qw(sparc64 sparc32);</span>

</pre>

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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            } elsif ($MARCH =~ /ppc64/) {</span></span>

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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+                $HOST_ARCH = $MARCH;</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+                @ARCHITECTURES = qw(ppc64 ppc64le);</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff">             } else {</span>

</pre>

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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff">                 $HOST_ARCH = $MARCH;</span>

</pre>

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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff">             }</span>

</pre>

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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/ngs-sdk/setup/konfigure.perl</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/ngs-sdk/setup/konfigure.perl</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="p">@@ -313,6 +313,8 @@</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff">     $BITS = '32_64';</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"> } elsif ($MARCH =~ /i?86/i) {</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff">     $BITS = 32;</span>

</pre>

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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+} elsif ($MARCH =~ /ppc64/i) {</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+    $BITS = 64;</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"> } else {</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff">     die "unrecognized Architecture '$ARCH'";</span>

</pre>

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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"> }</span>

</pre>

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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/ngs-sdk/setup/os-arch.prl</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/ngs-sdk/setup/os-arch.prl</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"><span class="p">@@ -55,6 +55,9 @@</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff">             } elsif ($MARCH =~ /sun4v/) {</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff">                 $HOST_ARCH = 'sparc64';</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff">                 @ARCHITECTURES = qw(sparc64 sparc32);</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            } elsif ($MARCH =~ /ppc64/) {</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+                $HOST_ARCH = $MARCH;</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+                @ARCHITECTURES = qw(ppc64 ppc64le);</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff">             } else {</span>

</pre>

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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff">                 $HOST_ARCH = $MARCH;</span>

</pre>

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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff">             }</span>

</pre>

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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/ngs-java/setup/konfigure.perl</span></span>

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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/ngs-java/setup/konfigure.perl</span></span>

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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="p">@@ -313,6 +313,8 @@</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff">     $BITS = '32_64';</span>

</pre>

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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"> } elsif ($MARCH =~ /i?86/i) {</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff">     $BITS = 32;</span>

</pre>

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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+} elsif ($MARCH =~ /ppc64/i) {</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+    $BITS = 64;</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"> } else {</span>

</pre>

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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff">     die "unrecognized Architecture '$ARCH'";</span>

</pre>

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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"> }</span></pre>

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</table>

<br>

</li>

<li id="5fa987681733f3fac1ce3ce91d2821213dcf0f8d">

<a href="https://salsa.debian.org/med-team/ngs-sdk/compare/7aacb2e730139b19dcfcd794ed8d058a3e771c32...bc239fe9c79c6e862aa0cc4e43bb0d9b9a8d6748#5fa987681733f3fac1ce3ce91d2821213dcf0f8d"><strong>debian/patches/fallback-on-generic-atomic32.patch</strong></a>

<hr>

<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Fallback on generic atomic32.h</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Frédéric Bonnard <frediz@debian.org></span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/813559</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/ngs-sdk/setup/konfigure.perl</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/ngs-sdk/setup/konfigure.perl</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">@@ -910,8 +910,13 @@</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

7

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">     }</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff">     if ($PIC) {</span>

</pre>

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9

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff">         if (PACKAGE_NAMW() eq 'NGS') {</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

10

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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-            L($F, "INCDIRS = \$(SRCINC) $INC\$(TOP) "</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

11

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-                .        "$INC\$(TOP)/ngs/\$(OSINC)/\$(ARCH)")</span></span>

</pre>

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12

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            if ( -d "ngs/unix/$MARCH" ) {</span></span>

</pre>

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13

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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+                L($F, "INCDIRS = \$(SRCINC) $INC\$(TOP) "</span></span>

</pre>

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14

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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+                    .        "$INC\$(TOP)/ngs/\$(OSINC)/\$(ARCH)")</span></span>

</pre>

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15

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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            } else {</span></span>

</pre>

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16

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+                L($F, "INCDIRS = \$(SRCINC) $INC\$(TOP) "</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

17

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+                    .        "$INC\$(TOP)/ngs/\$(OSINC)/generic")</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

18

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            }</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

19

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff">         } elsif (PACKAGE_NAMW() eq 'NGS_BAM') {</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

20

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff">             L($F, "INCDIRS = \$(SRCINC) $INC\$(TOP) "</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

21

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff">                 . "$INC\$(NGS_INCDIR)/ngs/\$(OSINC)/\$(ARCH)")</span></pre>

</td>

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</table>

<br>

</li>

<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">

<a href="https://salsa.debian.org/med-team/ngs-sdk/compare/7aacb2e730139b19dcfcd794ed8d058a3e771c32...bc239fe9c79c6e862aa0cc4e43bb0d9b9a8d6748#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>

<hr>

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1

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<td class="diff-line-num new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1

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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">fix_jni.patch</span>

</pre>

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2

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2

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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">do_not_exclude_certain_architectures_explicitly.patch</span>

</pre>

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3

</td>

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">fallback-on-generic-atomic32.patch</span>

</pre>

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4

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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">enable-ppc64el.patch</span></pre>

</td>

</tr>

</table>

<br>

</li>

<li id="8756c63497c8dc39f7773438edf53b220c773f67">

<a href="https://salsa.debian.org/med-team/ngs-sdk/compare/7aacb2e730139b19dcfcd794ed8d058a3e771c32...bc239fe9c79c6e862aa0cc4e43bb0d9b9a8d6748#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28,11 +28,13 @@ override_dh_auto_clean:</td>

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<td class="diff-line-num old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">     rm -f ngs-bam/Makefile.config.install.linux.x86_64.prl</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">     rm -f ngs-bam/Makefile.config.linux.x86_64</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">     rm -f ngs-bam/reconfigure</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">     rm -rf ngs-sdk/ngs/unix/generic</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">     rm -rf $(DEB_SOURCE)/$(MULTIARCH)</span>

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<td class="diff-line-num old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">     rm -rf ngs-python/build</span>

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<td class="diff-line-num old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext">override_dh_auto_configure:</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">     mkdir ngs-sdk/ngs/unix/generic && cp debian/atomic32.h ngs-sdk/ngs/unix/generic/</span>

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<td class="diff-line-num new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext">     # # that's no standard configure script lacking support of default options \</span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext">     ./configure --build=$(MULTIARCH) --prefix=/usr -- --source=1.7</span>

</pre>

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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"></span>

</pre>

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