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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/megahit">Debian Med / megahit</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/megahit/commit/4c86613c9fa1901111470d90c96a457ca19d53d5">4c86613c</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2019-10-11T15:01:01Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">megahit-data to allow for optional data installation or not
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/megahit/commit/560a3b91f081b945152a53dbf63fa6e1bb25a53f">560a3b91</a></strong>
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<span>by Shayan Doust</span>
<i>at 2019-10-11T15:10:20Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix metadata
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#c5d6e02dc75d1a522b0b0f520120eef0056a3a70">
<span class="new-file">
+
debian/megahit-data.install
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</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/megahit/compare/5966f87e705c488e79cced246c113b1647ec5907...560a3b91f081b945152a53dbf63fa6e1bb25a53f#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,7 @@ Uploaders: Shayan Doust <hello@shayandoust.me></td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 12),</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"><span class="idiff left right"> </span> cmake,</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"><span class="idiff left right"> </span> cmake,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> zlib1g-dev</span>
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Standards-Version: 4.4.0</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/megahit</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,9 +15,19 @@ Package: megahit</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> gzip,</span>
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> bzip2</span>
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Description: ultra-fast and memory-efficient meta-genome assembler</span>
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<td class="diff-line-num old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> Megahit is an ultra-fast and memory-efficient NGS assembler. It is</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> optimized for metagenomes, but also works well on generic single genome</span>
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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> assembly (small or mammalian size) and single-cell assembly.</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">Package: megahit-data</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">Depends: ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">Recommends: megahit</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">Description: test data for the megahit meta-genome assembler</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> Megahit is an ultra-fast and memory-efficient NGS assembler. It is</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> optimized for metagenomes, but also works well on generic single genome</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> assembly (small or mammalian size) and single-cell assembly.</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> This package contains some example and test data for megahit.</span></pre>
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<a href="https://salsa.debian.org/med-team/megahit/compare/5966f87e705c488e79cced246c113b1647ec5907...560a3b91f081b945152a53dbf63fa6e1bb25a53f#c5d6e02dc75d1a522b0b0f520120eef0056a3a70"><strong>debian/megahit-data.install</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">test_data</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">megahit</span><span class="o" style="font-weight: 600;">/</span><span class="nx">data</span></span></pre>
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<a href="https://salsa.debian.org/med-team/megahit/compare/5966f87e705c488e79cced246c113b1647ec5907...560a3b91f081b945152a53dbf63fa6e1bb25a53f#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"> Author: Dinghua Li, Chi-Man Liu, Ruibang Luo, Kunihiko Sadakane, Tak-Wah Lam</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> Title: <span class="idiff left right">MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Title: <span class="idiff left right">"MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph."</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Year: 2015</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Volume: 31</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> Pages: 1674-1676</span>
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