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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/1d971c0272084bf20e428dc6347b198ac96f769f">1d971c02</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-30T15:09:05Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Skip test_url_include in the autopkgtest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/b75bcfd3fa3dca0c163c00006cbb62f611196078">b75bcfd3</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-30T15:12:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">upstream is now using GitHub
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/9674274bcde77699a38a8974a9d66daf82aef47f">9674274b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-30T15:12:53Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/6729ed4f00b7dff95131f6e15a9ecbcc689e914e">6729ed4f</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-30T15:12:54Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.7.4</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/eab13697a6868086ce708c9629cf83a9e2914977">eab13697</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-30T15:13:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.7.4'
Update to upstream version '5.7.4'
with Debian dir 3982a972f45063ec4b08dc52f81ee49fe49d2939</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/229478179bdf701a694c4cf91e81cbce227d7068">22947817</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-30T15:19:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">freshen patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/4d1bfa6169f22fab24f3676cce4438952f72b1b4">4d1bfa61</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-30T15:24:12Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Repository.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/06b9ca3bfd4f74e37d183afeb633c8b670d3e222">06b9ca3b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-30T16:03:15Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt some of the new tests to use python3 instead of python
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/1a3221f5b6315305dc7eb3f0b9fdcedf711283dc">1a3221f5</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-30T16:09:08Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">make sure autopkgtests are run on the patched source
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/81bebe9be7a7c15bc2be324eecc56180f1387f59">81bebe9b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-30T16:27:12Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">copy the source before running autopkgtests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/ed9e8eb66d11f59c79843d40264646b4d4366dd1">ed9e8eb6</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-30T16:27:12Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a93800f494e087804c016fbdb4607cad81b91d6b">
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.circleci/common.sh
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<a href="#fd5da61396a8376845bee5cdf71aaf3c98a888ae">
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−
.circleci/config.yml
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<a href="#032226300244d8e7ecde74561a787746e9299d09">
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.circleci/setup.sh
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<a href="#eff4cd4a1e08155d42c85e48787c9e4c288b8d02">
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.coveragerc
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<li class="file-stats">
<a href="#24139dae656713ba861751fb2c2ac38839349a7a">
.gitattributes
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<a href="#a03585ab89eed5e0782a1875b2d8153b97865d30">
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.github/ISSUE_TEMPLATE/bug_report.md
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<li class="file-stats">
<a href="#67c0231b0ea83057a5f5c051eb28641a29af34a6">
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.github/ISSUE_TEMPLATE/feature_request.md
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<li class="file-stats">
<a href="#c778226b6c4c0fb51cf7942c8ee1f3d9fc1249d0">
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.github/workflows/main.yml
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<a href="#8c2ee9288b17817bf601b83cde380a0086a67745">
tests/test_omitfrom/expected-results/leveltwo_first.txt
→
.sonarcloud.properties
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<li class="file-stats">
<a href="#45267e3a9556cafa9cb7b61dab7a3b6659e73aad">
CHANGELOG.rst
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<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
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<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
MANIFEST.in
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#f5f51601866c86e59a004bd93fa415f5675be8c5">
debian/clean
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#0cd8999e60d37d01e0033f1ec12edfaa3bd76c23">
debian/patches/0003-Use-debian-s-mathjax-package.patch
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<li class="file-stats">
<a href="#1548825d34f08adcfa12441745daf04242e258f2">
debian/patches/0011-fix-privacy-breach.patch
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<li class="file-stats">
<a href="#14311a7e2fde4d3f5412d248239270f0dcead73f">
debian/patches/0012-reproducible-build.patch
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<li class="file-stats">
<a href="#3099d3b193ee5d195e9fef4d6fc3253cd1a1d175">
debian/patches/boto3_is_just_boto
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<a href="#0a4e986b60a9240ca7d53abf5e2ed246987e8ffc">
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debian/patches/python3
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
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<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
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<a href="#0c5e606b8190495bf7dabc7b15d0135b72486926">
docs/executable.rst
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<li class="file-stats">
<a href="#9617ea0d5d1a492cd381dd6bb688b8a5cbe6512b">
docs/getting_started/installation.rst
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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