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<h3>
Andreas Tille pushed to branch debian/stretch-backports
at <a href="https://salsa.debian.org/med-team/spoa">Debian Med / spoa</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/ebf2f14fcd800f7f4d07341cd349e620f414e173">ebf2f14f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-11-03T06:22:32Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not build with -march
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/f3715d269600dc7414ef8c3db98a293a23ca2d9e">f3715d26</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-11-03T06:23:00Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/3692bf0a3aadceb05c8fcd1ee9cf06c3ffd0f000">3692bf0a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-11-03T06:38:32Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Mark some symbols as optional
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/23b8d3869c1f10cf836d66d86d1e5dd3577e9145">23b8d386</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-11-03T06:39:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/71ad0509302b437057fa781a8b2cb7a16c00cac2">71ad0509</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-06T11:13:17Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set architecture to amd64 since the code is not really portable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/be43d11ca23357cdddd9740f209e4b6b16549094">be43d11c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-06T11:15:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/b53870fb8c821ffc1b90e133ebc55776e52dcf76">b53870fb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-28T19:04:57Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.1.5'
Update to upstream version '1.1.5'
with Debian dir aaf1b9c8c2dc3a33dfd0f9e2b591f899d5039f42</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/fe7cc8259359e98cc23153eb653f66327673e360">fe7cc825</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-28T19:04:57Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.1.5</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/c4cb707033d72449d5bc8f74b227d45c1f393771">c4cb7070</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-28T19:04:58Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/332c6d7126af8b2805771eff3e84cdc7816befa2">332c6d71</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-28T19:04:58Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/390b4a4d163123de63ce98c7acfab26d4a538ad8">390b4a4d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-28T19:05:03Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.3.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/873e98aa01d0a3cf19e586f04dbbac5a7211288e">873e98aa</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-28T19:58:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream changed ABI and we stick here to the broken way to set soversion = version but upstream was informed to invent better soversions
https://github.com/rvaser/spoa/issues/14
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/a1bf52d5a7d5a4d68c2240837815ccebb690c539">a1bf52d5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-28T20:14:30Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/5a2e4f4a33fc78af4bf287fbb4633631427c5f5a">5a2e4f4a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-12T19:06:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.0.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/b4a493d92aeecb0b2f682b86c91f0b4eb9bb6db2">b4a493d9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-12T19:06:20Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.0.0'
Update to upstream version '3.0.0'
with Debian dir 0e8b16b6e0672eb84fbd93c65f39f0ce958086fe</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/e6a8177991da9268ee32644393386ac0f803de87">e6a81779</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-12T19:06:20Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/75eb20c3b7463138357b0507ef6b110b59bbc3d3">75eb20c3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-12T19:06:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.4.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/6c649a0505faaf04da0ae0e5a00d91de06eccba7">6c649a05</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-12T19:35:34Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/e7c4827bc15d638b456337d2ccf288381a0036cb">e7c4827b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-12T19:45:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Needs newer version of libbioparser-dev
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/a419d24fe1ca9456deda344f8b8fe8af1296c825">a419d24f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-15T13:16:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Versioned Build-Depends: libbioparser-dev (>= 2.0)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/b171811dcb0cdcb786e4312ad1418f2be0f1bcd4">b171811d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-15T14:10:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bump soversion to 3
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/4b50f7d07a30f6cc2241b498bcd23a8d0efcf4d5">4b50f7d0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-15T14:28:13Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">dh_makeshlibs diff
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/9be03132f39ff0719ca7fc002e8bd1ecddcb7416">9be03132</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-15T14:30:42Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/b597239ee8ddff2d799ecf10542cc647e646a400">b597239e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-16T11:24:12Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix symbols file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/33f990e79b6902d18351906bf4246a1e4be918e3">33f990e7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-16T11:24:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.0.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/b3a6541196dfb9b61a22900253026736a02f64d1">b3a65411</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-16T11:24:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/997ab7311b1047a1817bd69db4202dd79bd78f2f">997ab731</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-16T11:24:41Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.0.1'
Update to upstream version '3.0.1'
with Debian dir e2eafb78e79c30d31ee8b11ca49b4e5785151a0e</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/60e1a4e5fa97cdbb7bc5416e523deedf91a795ca">60e1a4e5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-16T11:24:41Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/6a64908d37c934be755009937d096afd928ffbcb">6a64908d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-16T11:26:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/755cee4986fc06b6fd7d674aa44294e97f49bf32">755cee49</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-12T15:10:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'debian/3.0.1-1' into debian/stretch-backports
spoa Debian release 3.0.1-1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/commit/ac371fdc2b2cbb57572d9d3c6e4641d3169764dd">ac371fdc</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-12T15:12:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Rebuild for stretch-backports
</pre>
</li>
</ul>
<h4>20 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#15c817ac9a74289d2d43e2247d6ace4d9b5a09bd">
<span class="new-file">
+
debian/patches/fix_soversion.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#295815bc81b7664bf5f47a7f64db6af47ad53941">
debian/patches/shared_and_static.patch
</a>
</li>
<li class="file-stats">
<a href="#ee54dc79014b3def963898e50c98877d46c6b27e">
debian/patches/use_debian_packaged_libs.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#7131a0f90a08bd29c4474f8cff08d3d4a1c36c54">
include/spoa/alignment_engine.hpp
</a>
</li>
<li class="file-stats">
<a href="#fc34f7802c8e4e1d8f77ea7adcee918dd50c2131">
include/spoa/graph.hpp
</a>
</li>
<li class="file-stats">
<a href="#0e61f2dfddba824cbd5ec69f94eb6bc89754cf67">
src/alignment_engine.cpp
</a>
</li>
<li class="file-stats">
<a href="#5b11ed83019dc2479735a42da7b6c9eeb7155c33">
src/graph.cpp
</a>
</li>
<li class="file-stats">
<a href="#b958235ee8db37bcaceda04b6d55553b450c2db4">
src/main.cpp
</a>
</li>
<li class="file-stats">
<a href="#33989c7ff155a4fed2047c4702a802ca716cb582">
src/sequence.cpp
</a>
</li>
<li class="file-stats">
<a href="#a62fd960b6b8c160d72e606a91e4a97b02f07bcf">
src/sequence.hpp
</a>
</li>
<li class="file-stats">
<a href="#5e55a1978d21ee121a01701392e1bc0afbb50337">
src/simd_alignment_engine.cpp
</a>
</li>
<li class="file-stats">
<a href="#bcc714a60da7848e0bbf581eaf430d24415bf737">
src/simd_alignment_engine.hpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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