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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/racon">Debian Med / racon</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/racon/commit/f4113ce161e94e107d7d1e2663fd7421ba56a207">f4113ce1</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2019-11-12T14:45:04Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set the racon_wrapper to use /usr/bin/rampler
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<h4>3 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#ee54dc79014b3def963898e50c98877d46c6b27e">
debian/patches/use_debian_packaged_libs.patch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/racon/commit/f4113ce161e94e107d7d1e2663fd7421ba56a207#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">racon (1.4.10-2) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Set the racon_wrapper to use /usr/bin/rampler</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 12 Nov 2019 15:44:13 +0100</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">racon (1.4.10-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * Team upload.</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/racon/commit/f4113ce161e94e107d7d1e2663fd7421ba56a207#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,7 +21,7 @@ Package: racon</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext">Recommends: python3</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">Recommends: python3<span class="idiff left right">, rampler</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Description: consensus module for raw de novo DNA assembly of long uncorrected reads</span>
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<td class="diff-line-num old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> Racon is intended as a standalone consensus module to correct raw</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> contigs generated by rapid assembly methods which do not include a</span>
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<li id="ee54dc79014b3def963898e50c98877d46c6b27e">
<a href="https://salsa.debian.org/med-team/racon/commit/f4113ce161e94e107d7d1e2663fd7421ba56a207#ee54dc79014b3def963898e50c98877d46c6b27e"><strong>debian/patches/use_debian_packaged_libs.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -46,3 +46,12 @@ Description: Use Debian packaged libraries</td>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="diff"> if (racon_enable_cuda)</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="diff"> target_link_libraries(racon_test cudapoa cudaaligner)</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="diff"> endif()</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"><span class="p">@@ -130,7 +115,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"> if (racon_build_wrapper)</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"> set(racon_path ${PROJECT_BINARY_DIR}/bin/racon)</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- set(rampler_path ${PROJECT_BINARY_DIR}/vendor/rampler/bin/rampler)</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ set(rampler_path /usr/bin/rampler)</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"> configure_file(${PROJECT_SOURCE_DIR}/scripts/racon_wrapper.py</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"> ${PROJECT_BINARY_DIR}/${CMAKE_FILES_DIRECTORY}/racon_wrapper)</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"> file(COPY ${PROJECT_BINARY_DIR}/${CMAKE_FILES_DIRECTORY}/racon_wrapper</span></pre>
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