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<h3>
Olivier Sallou pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/biomaj3-daemon">Debian Med / biomaj3-daemon</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/biomaj3-daemon/commit/bd6db3f21b9f946cda504696c757a6953e3cdec7">bd6db3f2</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2019-11-12T10:34:13Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.0.20</pre>
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<h4>4 changed files:</h4>
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<a href="#3251d7a8143ce2e789f0468513df8f285f842c3a">
CHANGES.txt
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<li class="file-stats">
<a href="#98650bd1fd25b0c601a7ca974b5e948457295175">
biomaj_daemon/daemon/biomaj_daemon_web.py
</a>
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<li class="file-stats">
<a href="#8d4e7b9777648699189cde60ef87d204c8800e22">
biomaj_daemon/daemon/utils.py
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<h4>Changes:</h4>
<li id="3251d7a8143ce2e789f0468513df8f285f842c3a">
<a href="https://salsa.debian.org/med-team/biomaj3-daemon/commit/bd6db3f21b9f946cda504696c757a6953e3cdec7#3251d7a8143ce2e789f0468513df8f285f842c3a"><strong>CHANGES.txt</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">3.0.20:</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> Add some checks on options</span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Add data-list and data-import options</span>
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1
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">3.0.19:</span>
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2
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Fix traefix prefix</span>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">3.0.18:</span>
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<li id="98650bd1fd25b0c601a7ca974b5e948457295175">
<a href="https://salsa.debian.org/med-team/biomaj3-daemon/commit/bd6db3f21b9f946cda504696c757a6953e3cdec7#98650bd1fd25b0c601a7ca974b5e948457295175"><strong>biomaj_daemon/daemon/biomaj_daemon_web.py</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -154,7 +154,9 @@ OPTIONS_PARAMS = {</td>
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154
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<td class="diff-line-num new_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
154
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="python"> <span class="s" style="color: #d14;">'proxy'</span><span class="p">:</span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
155
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<td class="diff-line-num new_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="python"> <span class="s" style="color: #d14;">'schedule'</span><span class="p">:</span> <span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
156
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<td class="diff-line-num new_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="python"> <span class="s" style="color: #d14;">'history'</span><span class="p">:</span> <span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
157
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<td class="diff-line-num new_line old" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="python"> <span class="s" style="color: #d14;">'historyLimit'</span><span class="p">:</span> <span class="mi" style="color: #099;">20</span></span>
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<td class="diff-line-num new old_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="python"> <span class="s" style="color: #d14;">'historyLimit'</span><span class="p">:</span> <span class="mi" style="color: #099;">20</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="python"> <span class="s" style="color: #d14;">'datalist'</span><span class="p">:</span> <span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="python"> <span class="s" style="color: #d14;">'dataimport'</span><span class="p">:</span> <span class="bp" style="color: #999;">False</span></span>
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158
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<td class="diff-line-num new_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
160
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="python"><span class="p">}</span></span>
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<td class="diff-line-num old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
159
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="python"></span>
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160
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<td class="diff-line-num new_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="python"></span>
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<li id="8d4e7b9777648699189cde60ef87d204c8800e22">
<a href="https://salsa.debian.org/med-team/biomaj3-daemon/commit/bd6db3f21b9f946cda504696c757a6953e3cdec7#8d4e7b9777648699189cde60ef87d204c8800e22"><strong>biomaj_daemon/daemon/utils.py</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="712" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="712" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -712,6 +712,8 @@ def biomaj_update_status(options, config):</td>
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712
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712
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<pre style="margin: 0;"> <span id="LC712" class="line" lang="python"> <span class="s" style="color: #d14;">'''</span></span>
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713
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<pre style="margin: 0;"> <span id="LC713" class="line" lang="python"><span class="s" style="color: #d14;"> get the status of a bank during an update cycle</span></span>
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714
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714
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<pre style="margin: 0;"> <span id="LC714" class="line" lang="python"><span class="s" style="color: #d14;"> '''</span></span>
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715
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<pre style="margin: 0;">+<span id="LC715" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">bank</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="716" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
716
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<pre style="margin: 0;">+<span id="LC716" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="s" style="color: #d14;">'bank option is missing'</span><span class="p">)</span></span>
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715
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<td class="diff-line-num new_line" data-linenumber="717" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
717
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<pre style="margin: 0;"> <span id="LC717" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">proxy</span><span class="p">:</span></span>
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716
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<td class="diff-line-num new_line" data-linenumber="718" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
718
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<pre style="margin: 0;"> <span id="LC718" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="s" style="color: #d14;">'option not allowed without --proxy option'</span><span class="p">)</span></span>
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717
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719
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<pre style="margin: 0;"> <span id="LC719" class="line" lang="python"> <span class="n" style="color: #333;">redis_client</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">redis</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">StrictRedis</span><span class="p">(</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="827" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="829" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -827,6 +829,27 @@ def biomaj_stats(options, config):</td>
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827
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829
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<pre style="margin: 0;"> <span id="LC829" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">msg</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="828" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
828
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830
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<pre style="margin: 0;"> <span id="LC830" class="line" lang="python"></span>
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829
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831
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<pre style="margin: 0;"> <span id="LC831" class="line" lang="python"></span>
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832
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<pre style="margin: 0;">+<span id="LC832" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">biomaj_data_list</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="833" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
833
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<pre style="margin: 0;">+<span id="LC833" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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834
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<pre style="margin: 0;">+<span id="LC834" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">biomaj_data.utils</span> <span class="kn" style="font-weight: 600;">import</span> <span class="nb" style="color: #0086b3;">list</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">blist</span></span>
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<td class="diff-line-num new new_line" data-linenumber="835" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
835
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<pre style="margin: 0;">+<span id="LC835" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="s" style="color: #d14;">'Bank templates: '</span> <span class="o" style="font-weight: 600;">+</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">blist</span><span class="p">()))</span></span>
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836
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<pre style="margin: 0;">+<span id="LC836" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">Exception</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="837" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
837
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<pre style="margin: 0;">+<span id="LC837" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="s" style="color: #d14;">'biomaj-data package not installed'</span><span class="p">)</span></span>
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838
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<pre style="margin: 0;">+<span id="LC838" class="line" lang="python"></span>
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839
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<pre style="margin: 0;">+<span id="LC839" class="line" lang="python"></span>
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840
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<pre style="margin: 0;">+<span id="LC840" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">biomaj_data_import</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">):</span></span>
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<td class="diff-line-num new new_line" data-linenumber="841" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
841
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<pre style="margin: 0;">+<span id="LC841" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">bank</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="842" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
842
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<pre style="margin: 0;">+<span id="LC842" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="s" style="color: #d14;">'option bank is missing'</span><span class="p">)</span></span>
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843
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<pre style="margin: 0;">+<span id="LC843" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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844
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<pre style="margin: 0;">+<span id="LC844" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">biomaj_data.utils</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">importTo</span></span>
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845
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<pre style="margin: 0;">+<span id="LC845" class="line" lang="python"> <span class="p">(</span><span class="n" style="color: #333;">err</span><span class="p">,</span> <span class="n" style="color: #333;">file_path</span><span class="p">)</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">importTo</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">bank</span><span class="p">,</span> <span class="n" style="color: #333;">BiomajConfig</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">global_config</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'GENERAL'</span><span class="p">,</span> <span class="s" style="color: #d14;">'conf.dir'</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="846" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
846
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<pre style="margin: 0;">+<span id="LC846" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">err</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="847" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
847
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<pre style="margin: 0;">+<span id="LC847" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">file_path</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="848" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
848
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<pre style="margin: 0;">+<span id="LC848" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="s" style="color: #d14;">'Bank imported: '</span> <span class="o" style="font-weight: 600;">+</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">file_path</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="849" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
849
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<pre style="margin: 0;">+<span id="LC849" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">Exception</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="850" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
850
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<pre style="margin: 0;">+<span id="LC850" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="s" style="color: #d14;">'biomaj-data package not installed'</span><span class="p">)</span></span>
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851
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<pre style="margin: 0;">+<span id="LC851" class="line" lang="python"></span>
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852
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<pre style="margin: 0;">+<span id="LC852" class="line" lang="python"></span>
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830
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853
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<pre style="margin: 0;"> <span id="LC853" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">biomaj_history</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">):</span></span>
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831
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854
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<pre style="margin: 0;"> <span id="LC854" class="line" lang="python"> <span class="n" style="color: #333;">history</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Bank</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get_history</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">historyLimit</span><span class="p">)</span></span>
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832
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855
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<pre style="margin: 0;"> <span id="LC855" class="line" lang="python"> <span class="n" style="color: #333;">results</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="925" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="948" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -925,5 +948,9 @@ def biomaj_client_action(options, config=None):</td>
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925
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948
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<pre style="margin: 0;"> <span id="LC948" class="line" lang="python"></span>
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926
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949
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<pre style="margin: 0;"> <span id="LC949" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">aboutme</span><span class="p">:</span></span>
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927
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950
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<pre style="margin: 0;"> <span id="LC950" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">biomaj_user_info</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">)</span></span>
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951
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<pre style="margin: 0;">+<span id="LC951" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">datalist</span><span class="p">:</span></span>
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952
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<pre style="margin: 0;">+<span id="LC952" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">biomaj_data_list</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="953" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
953
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<pre style="margin: 0;">+<span id="LC953" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dataimport</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="954" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
954
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<pre style="margin: 0;">+<span id="LC954" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">biomaj_data_import</span><span class="p">(</span><span class="n" style="color: #333;">options</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="p">)</span></span>
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928
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955
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<pre style="margin: 0;"> <span id="LC955" class="line" lang="python"></span>
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929
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956
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<pre style="margin: 0;"> <span id="LC956" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="s" style="color: #d14;">"no option match"</span><span class="p">)</span></span></pre>
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<a href="https://salsa.debian.org/med-team/biomaj3-daemon/commit/bd6db3f21b9f946cda504696c757a6953e3cdec7#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,7 +21,7 @@ config = {</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="python"> <span class="s" style="color: #d14;">'url'</span><span class="p">:</span> <span class="s" style="color: #d14;">'http://biomaj.genouest.org'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="python"> <span class="s" style="color: #d14;">'download_url'</span><span class="p">:</span> <span class="s" style="color: #d14;">'http://biomaj.genouest.org'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="python"> <span class="s" style="color: #d14;">'author_email'</span><span class="p">:</span> <span class="s" style="color: #d14;">'olivier.sallou@irisa.fr'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="python"> <span class="s" style="color: #d14;">'version'</span><span class="p">:</span> <span class="s" style="color: #d14;">'3.0.<span class="idiff left right">19</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"> <span class="s" style="color: #d14;">'version'</span><span class="p">:</span> <span class="s" style="color: #d14;">'3.0.<span class="idiff left right">20</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="python"> <span class="s" style="color: #d14;">'classifiers'</span><span class="p">:</span> <span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># How mature is this project? Common values are</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># 3 - Alpha</span></span>
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