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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/9f1d683ef0673fd9031dfd91a0144ef96c5000fb">9f1d683e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-15T13:23:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.8.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/b0aad4a0df82884e1e3e59436cbd743d5caed5f8">b0aad4a0</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-15T14:36:29Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.8.1</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#eff4cd4a1e08155d42c85e48787c9e4c288b8d02">
<span class="deleted-file">
−
.coveragerc
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<li class="file-stats">
<a href="#c778226b6c4c0fb51cf7942c8ee1f3d9fc1249d0">
.github/workflows/main.yml
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<li class="file-stats">
<a href="#45267e3a9556cafa9cb7b61dab7a3b6659e73aad">
CHANGELOG.rst
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<li class="file-stats">
<a href="#4a8486805915245bbbe2e3c8c1a9d680c6843a82">
LICENSE.md
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#aa070a9c9eb13bc0377eb60b4ef071df17152ac7">
<span class="new-file">
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docs/executing/caching.rst
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<li class="file-stats">
<a href="#5026e4863ea12b5792ff52f548d70284c3c1a181">
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docs/executing/cli.rst
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<li class="file-stats">
<a href="#f1dc0d1ef6d18ec89b045bf0e12d929f3dcbf3e2">
docs/executable.rst
→
docs/executing/cluster-cloud.rst
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<li class="file-stats">
<a href="#d7b11acbae502ce46216c56c2dcb190943a3c1f9">
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docs/executing/interoperability.rst
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<li class="file-stats">
<a href="#7660ce5ab96ca470bcb45e8555ac6ab2efc530f9">
docs/getting_started/examples.rst
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<a href="#d0153cac95479af9bfb99b746b633bc8255bb53a">
docs/index.rst
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<li class="file-stats">
<a href="#cc31921d407405d25ab3b66029cd6f032441fd24">
docs/project_info/contributing.rst
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<li class="file-stats">
<a href="#f2ad3e3ae7fe1cf3ff9f5d75e080faf74d1d8980">
docs/snakefiles/reporting.rst
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<li class="file-stats">
<a href="#dfeb7b6e739ba66056c1799c63a5a39c7698b59f">
docs/snakefiles/rules.rst
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<li class="file-stats">
<a href="#70cc39a4bac330f22eb250cec026556d0892ac8a">
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format.sh
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<li class="file-stats">
<a href="#c2acba86d5ef7b186a3f54c5fcbfeeb889e18738">
misc/vim/syntax/snakemake.vim
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#d366205d7cd679ff6d4a61f70728e92537101763">
snakemake/__init__.py
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<li class="file-stats">
<a href="#5e16cbeea010f59dbef52f8950f4873c94f39c7e">
snakemake/_version.py
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<li class="file-stats">
<a href="#1f2b5ab7db93d7cfd11a4660dfd26daffc5b38dc">
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snakemake/caching/__init__.py
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<li class="file-stats">
<a href="#be949de8c0e74a7737ba3be8743dda889e7d51bf">
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snakemake/caching/hash.py
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<li class="file-stats">
<a href="#5752dcb5dceb2252f447b747551b9e646cf1865e">
<span class="new-file">
+
snakemake/caching/local.py
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<li class="file-stats">
<a href="#b37760e766d43fdddb378b4d0302d4ad6fa1e3c3">
<span class="new-file">
+
snakemake/caching/remote.py
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</li>
<li class="file-stats">
<a href="#79c2ae1b959ead58197523e6ba45d7c029cb1ef0">
snakemake/checkpoints.py
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</li>
<li class="file-stats">
<a href="#df4be91675a0ec494b4883d845ec77d630aa9b66">
snakemake/common.py
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<li class="file-stats">
<a href="#42300b585ee7e51f9c6cfad5a88cf8ed5c4bd8fa">
snakemake/cwl.py
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<li class="file-stats">
<a href="#9821437dfb3fff8383b6066a2a3c7aa3f6712a32">
snakemake/dag.py
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<li class="file-stats">
<a href="#f26ea241de6ff4cfc0be3675c4f2da7114bd889d">
snakemake/exceptions.py
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</li>
<li class="file-stats">
<a href="#1dba76c2cca537b789f8754f5ddbed5dc36c6dee">
snakemake/executors.py
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<li class="file-stats">
<a href="#d8cb360f57ca9d09fb6b6848f5eae5812d96a227">
snakemake/gui.py
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</ul>
<h5>The diff was not included because it is too large.</h5>
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