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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/0b2c371887f02de90222e3a2b257f832de8a2517">0b2c3718</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-15T13:23:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/9f1d683ef0673fd9031dfd91a0144ef96c5000fb">9f1d683e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-15T13:23:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.8.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/43c3106b93845cfe34c5a08a5e302738f7c35d09">43c3106b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-15T13:23:56Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.8.0'
Update to upstream version '5.8.0'
with Debian dir 3d8b8556f7e10a15d53d977bdd8876379ea669e8</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/238e880fc6e6ad9d38d392ae5c522e52db124a33">238e880f</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-15T13:31:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/0e6628ab5be90ab19e681eb53f62a5d5373521be">0e6628ab</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-15T13:44:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">disable new tests that require boto/moto or singularity
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/cbd4f6708328a68697c019a05e60e8840b06c407">cbd4f670</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-15T14:36:05Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add the reporting deps
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/c646d8f40515e77ff02c79c20a3999d7f84c056b">c646d8f4</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-15T14:36:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/b0aad4a0df82884e1e3e59436cbd743d5caed5f8">b0aad4a0</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-15T14:36:29Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.8.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/23db5a2ccd804b2233d3a3428d166c16721b35d8">23db5a2c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-15T14:36:37Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.8.1'
Update to upstream version '5.8.1'
with Debian dir 013b73b7abc1b2f375b091622073ef141cd25fb3</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/40c648afe786196da8c53d8fc96b636280715938">40c648af</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-15T14:55:45Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#eff4cd4a1e08155d42c85e48787c9e4c288b8d02">
<span class="deleted-file">
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.coveragerc
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<li class="file-stats">
<a href="#c778226b6c4c0fb51cf7942c8ee1f3d9fc1249d0">
.github/workflows/main.yml
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<li class="file-stats">
<a href="#45267e3a9556cafa9cb7b61dab7a3b6659e73aad">
CHANGELOG.rst
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<a href="#4a8486805915245bbbe2e3c8c1a9d680c6843a82">
LICENSE.md
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#1548825d34f08adcfa12441745daf04242e258f2">
debian/patches/0011-fix-privacy-breach.patch
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<li class="file-stats">
<a href="#14311a7e2fde4d3f5412d248239270f0dcead73f">
debian/patches/0012-reproducible-build.patch
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<a href="#0a4e986b60a9240ca7d53abf5e2ed246987e8ffc">
debian/patches/python3
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<a href="#aa070a9c9eb13bc0377eb60b4ef071df17152ac7">
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docs/executing/caching.rst
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docs/executing/cli.rst
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<a href="#f1dc0d1ef6d18ec89b045bf0e12d929f3dcbf3e2">
docs/executable.rst
→
docs/executing/cluster-cloud.rst
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<a href="#d7b11acbae502ce46216c56c2dcb190943a3c1f9">
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docs/executing/interoperability.rst
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<a href="#7660ce5ab96ca470bcb45e8555ac6ab2efc530f9">
docs/getting_started/examples.rst
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<a href="#d0153cac95479af9bfb99b746b633bc8255bb53a">
docs/index.rst
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<a href="#cc31921d407405d25ab3b66029cd6f032441fd24">
docs/project_info/contributing.rst
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<a href="#f2ad3e3ae7fe1cf3ff9f5d75e080faf74d1d8980">
docs/snakefiles/reporting.rst
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<a href="#dfeb7b6e739ba66056c1799c63a5a39c7698b59f">
docs/snakefiles/rules.rst
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<a href="#70cc39a4bac330f22eb250cec026556d0892ac8a">
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format.sh
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<a href="#c2acba86d5ef7b186a3f54c5fcbfeeb889e18738">
misc/vim/syntax/snakemake.vim
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#d366205d7cd679ff6d4a61f70728e92537101763">
snakemake/__init__.py
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<a href="#5e16cbeea010f59dbef52f8950f4873c94f39c7e">
snakemake/_version.py
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<a href="#1f2b5ab7db93d7cfd11a4660dfd26daffc5b38dc">
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snakemake/caching/__init__.py
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<li class="file-stats">
<a href="#be949de8c0e74a7737ba3be8743dda889e7d51bf">
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snakemake/caching/hash.py
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<a href="#5752dcb5dceb2252f447b747551b9e646cf1865e">
<span class="new-file">
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snakemake/caching/local.py
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<a href="#b37760e766d43fdddb378b4d0302d4ad6fa1e3c3">
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snakemake/caching/remote.py
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777;">
—
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<a href="https://salsa.debian.org/med-team/snakemake/compare/f0683707ae617ce248adce72053217f110758e33...40c648afe786196da8c53d8fc96b636280715938">View it on GitLab</a>.
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