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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/salmon">Debian Med / salmon</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/commit/803ed557f660c6980a5451316e43fb354782fc4e">803ed557</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-14T13:52:13Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/commit/8cda0556c049b9ca06e6625f6be28c7910ae79c9">8cda0556</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-14T13:52:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0.0+ds1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/commit/feae1c21f2c5ea3c5db686feb644073845b6ccba">feae1c21</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-14T13:52:18Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.0.0+ds1'
Update to upstream version '1.0.0+ds1'
with Debian dir e88382c09bb096815bc75f751a608afb05b3a49d</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/commit/2d91a366934de5ff8c7b5e8b676a91801ec14c29">2d91a366</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-14T13:52:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/commit/50f4ae14d9cca461e8944f5d09c24d62e98fbdfb">50f4ae14</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-14T13:52:22Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.4.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/commit/ca6a6a7a69325ea146892f2a2a50bd2597a3c834">ca6a6a7a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-14T13:54:18Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">trim the Files-Excluded list
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/commit/42d6c36a6ece6095440cec44fc8014c7d70ad1a2">42d6c36a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-14T14:05:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/commit/725cba44686f9a10080a868ac7a95604c73972e8">725cba44</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-14T14:06:16Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update my email address
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/commit/973f063bdeea9f6e06a20958debec97733de2b63">973f063b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-17T16:02:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">document pufferfish missing package
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#38df0d119dd4bbf9324a89a5240408ff37d2bfb3">
.drone/build.sh
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#ecdbdab51637eb3c723d500a40b418def64fdef7">
<span class="new-file">
+
cmake/Modules/FindCereal.cmake
</span>
</a>
</li>
<li class="file-stats">
<a href="#1d8b7557f4abfe2c6b4f47db182b7010d5c089aa">
<span class="new-file">
+
cmake/Modules/Findlibdivsufsort.cmake
</span>
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</li>
<li class="file-stats">
<a href="#0d661eba74194cb1c277a6b45bf05b7ef61b49e3">
<span class="new-file">
+
cmake/Modules/Findlibgff.cmake
</span>
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<li class="file-stats">
<a href="#e2d71030997657c2af63714f999483b9b35a449a">
<span class="new-file">
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cmake/Modules/Findlibstadenio.cmake
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</li>
<li class="file-stats">
<a href="#1042d35d9e51c166db8e5dad7c1a75c8d8332ffa">
cmake/TestSalmonQuasi.cmake
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</li>
<li class="file-stats">
<a href="#34ffb03041dc818ba71da0518ec52a0134f543f8">
current_version.txt
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
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</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#bae08dca7af50ae6494331a147cd30150ecb5714">
debian/patches/disable-version-check.patch
</a>
</li>
<li class="file-stats">
<a href="#ee54dc79014b3def963898e50c98877d46c6b27e">
debian/patches/use_debian_packaged_libs.patch
</a>
</li>
<li class="file-stats">
<a href="#5a1b92f4d2201f84f3ab9bfe7917ee0a5531e53d">
doc/source/alevin.rst
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</li>
<li class="file-stats">
<a href="#9d4e8ab62832d7b298261aae1fe1123d28783525">
doc/source/conf.py
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<li class="file-stats">
<a href="#a5a37e13ff2eff3b2a68458692c4b83bb7097cf1">
doc/source/library_type.rst
</a>
</li>
<li class="file-stats">
<a href="#d2512a023edf5bc0bc15dc59b6ac10eae6a5dd2d">
doc/source/salmon.rst
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</li>
<li class="file-stats">
<a href="#87a3a9314333c591d8bda7edee40ff4857d72464">
doc/steps_to_prepare_release.md
</a>
</li>
<li class="file-stats">
<a href="#8ffde13df31f212345642ccfa4755f3bd99e7e61">
docker/Dockerfile
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<li class="file-stats">
<a href="#3cbc10c17d78796adbdc9a8a8b8702f83a02d41f">
docker/build_test.sh
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</li>
<li class="file-stats">
<a href="#bde78d1844ec01264c5d4743a583c958c681b010">
<span class="new-file">
+
include/AlevinHash.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#2bc7c7c64784b968b1404d3f09805fe683f980b1">
include/AlevinOpts.hpp
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<li class="file-stats">
<a href="#740f5e5c647e154c4b3feff897ca8ed5293c0498">
include/AlevinTypes.hpp
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<li class="file-stats">
<a href="#1fe0f4d55f3b84573f46c3b205cdf1546c6f1595">
include/AlevinUtils.hpp
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</li>
<li class="file-stats">
<a href="#af2b8b5096a067a33dd332bbfd1080ae3cf4763d">
include/AlignmentGroup.hpp
</a>
</li>
<li class="file-stats">
<a href="#5cef8fa5ec1ece7a48a7915ced5deaf811bf19f5">
include/AlignmentLibrary.hpp
</a>
</li>
<li class="file-stats">
<a href="#190d99cc5ab950958653ebc379ba8a35f8e86031">
include/BAMQueue.tpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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