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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/commit/7cff89fb9087a221a7a3067091f0fa07edc7711a">7cff89fb</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-17T13:37:42Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/commit/05e4af949bca37ffb531a3ad1f15e2fe55bfc168">05e4af94</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-17T13:37:43Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.21.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/commit/ce72a71dec1a5762655ef6c1c80f5a457d9d819a">ce72a71d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-17T13:37:53Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.21.0'
Update to upstream version '3.21.0'
with Debian dir cf76bfb22975df7216559b14a3e8b0f3d5fddb3c</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/commit/a6af41fc21481f3906c1159dfac2fbbec586defc">a6af41fc</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-17T13:46:31Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">freshen patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/commit/8c692c0b16e201b1f6e8136e7d4ed6f1f990b7d6">8c692c0b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-17T14:14:08Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">
.gitlab-ci.yml
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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</li>
<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
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</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#17f59bf2814bb5df9051cfdd9d5798e79655e9fe">
<span class="deleted-file">
−
debian/patches/adjust_to_newer_cwltool
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</a>
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<li class="file-stats">
<a href="#7d50ce949dd83a42315e1f32258188ca8a9ffb91">
debian/patches/fix_tests
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<li class="file-stats">
<a href="#e94fbb8719c4a68a67df894f2683205bb9914852">
debian/patches/no_galaxy_lib
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<li class="file-stats">
<a href="#162e41e7c3dcfdb5813c4718e3f8503d4861a8ba">
debian/patches/remove-pathlib2-dep
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#c1fb0e9c942747a583cd8adc2707dd0cb1d97505">
debian/patches/soften-mesos-deps
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<li class="file-stats">
<a href="#cb805f74cef9b2dafa0758f976c0bcadda0b7dde">
debian/patches/version.patch
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<li class="file-stats">
<a href="#734cb112ea615891b9ef15d07ae7bc1dee10abc3">
docker/Dockerfile.py
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<li class="file-stats">
<a href="#98b0a1e2c9644c87d8bb8f60a479e7b366cc7607">
docs/appendices/architecture.rst
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<li class="file-stats">
<a href="#4ec21f7a5e9be43613b40a694d2370760519a131">
<span class="new-file">
+
docs/appendices/aws_min_permissions.rst
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<li class="file-stats">
<a href="#f99c72d2aacbf31ded1872c66de3f988dced0301">
docs/appendices/environment_vars.rst
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</li>
<li class="file-stats">
<a href="#2284ecc5e48106665b37d5c4bcf3a09fe784faeb">
docs/appendices/staticAzure.rst
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<li class="file-stats">
<a href="#abd8589b4d5ee2ea66ee95d8caf4e8759ffb9ce0">
docs/contributing/contributing.rst
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<li class="file-stats">
<a href="#5e25feb6b25012c00d6a27af4470f92ec5ccb67b">
docs/developingWorkflows/developing.rst
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</li>
<li class="file-stats">
<a href="#cb9729d9831b9bd58e9bb638cc0c36e12ae1d1c1">
docs/developingWorkflows/toilAPIFilestore.rst
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</li>
<li class="file-stats">
<a href="#9c7786e2c4730fab23a42468d049ec242c297b8c">
docs/gettingStarted/install.rst
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<li class="file-stats">
<a href="#f6fd38662d0696a7f4554040b8fec01f4f63546b">
docs/gettingStarted/quickStart.rst
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<li class="file-stats">
<a href="#d0153cac95479af9bfb99b746b633bc8255bb53a">
docs/index.rst
</a>
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<li class="file-stats">
<a href="#32be2c2e3690a70b96e3263f2bb4aa0ce226602a">
docs/running/cliOptions.rst
</a>
</li>
<li class="file-stats">
<a href="#8e4430ed91538c989bbba29d0f6541cce24a88d1">
docs/running/cloud/amazon.rst
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</li>
<li class="file-stats">
<a href="#040bb5962a87ee2772d8d1741c810c1727cf0bcc">
docs/running/cloud/azure.rst
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<li class="file-stats">
<a href="#2504a191cff70b050dc46c5c1c3823d7872aa114">
docs/running/cloud/cloud.rst
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<li class="file-stats">
<a href="#2a53c4a04324247c2fb07f240c51435da9975175">
docs/running/cloud/gce.rst
</a>
</li>
<li class="file-stats">
<a href="#54aa56c0c0e2cd49ea7a6083879baecb55a418b1">
docs/running/cwl.rst
</a>
</li>
<li class="file-stats">
<a href="#2bc4216ad4aeb71ac42dace0d0de50ccaaca3718">
docs/running/debugging.rst
</a>
</li>
<li class="file-stats">
<a href="#dac3c500fb7199030518b77e687a47a830e4074d">
docs/running/introduction.rst
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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