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GitLab
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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/salmon">Debian Med / salmon</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/commit/8cda0556c049b9ca06e6625f6be28c7910ae79c9">8cda0556</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-11-14T13:52:14Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0.0+ds1</pre>
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<h4>30 changed files:</h4>
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<a href="#38df0d119dd4bbf9324a89a5240408ff37d2bfb3">
.drone/build.sh
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<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#ecdbdab51637eb3c723d500a40b418def64fdef7">
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cmake/Modules/FindCereal.cmake
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<li class="file-stats">
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cmake/Modules/Findlibdivsufsort.cmake
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cmake/Modules/Findlibgff.cmake
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cmake/Modules/Findlibstadenio.cmake
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<li class="file-stats">
<a href="#1042d35d9e51c166db8e5dad7c1a75c8d8332ffa">
cmake/TestSalmonQuasi.cmake
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<a href="#34ffb03041dc818ba71da0518ec52a0134f543f8">
current_version.txt
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<a href="#5a1b92f4d2201f84f3ab9bfe7917ee0a5531e53d">
doc/source/alevin.rst
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<a href="#9d4e8ab62832d7b298261aae1fe1123d28783525">
doc/source/conf.py
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<a href="#a5a37e13ff2eff3b2a68458692c4b83bb7097cf1">
doc/source/library_type.rst
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<li class="file-stats">
<a href="#d2512a023edf5bc0bc15dc59b6ac10eae6a5dd2d">
doc/source/salmon.rst
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<a href="#87a3a9314333c591d8bda7edee40ff4857d72464">
doc/steps_to_prepare_release.md
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<a href="#8ffde13df31f212345642ccfa4755f3bd99e7e61">
docker/Dockerfile
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<a href="#3cbc10c17d78796adbdc9a8a8b8702f83a02d41f">
docker/build_test.sh
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<a href="#bde78d1844ec01264c5d4743a583c958c681b010">
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include/AlevinHash.hpp
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<li class="file-stats">
<a href="#2bc7c7c64784b968b1404d3f09805fe683f980b1">
include/AlevinOpts.hpp
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<a href="#740f5e5c647e154c4b3feff897ca8ed5293c0498">
include/AlevinTypes.hpp
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<li class="file-stats">
<a href="#1fe0f4d55f3b84573f46c3b205cdf1546c6f1595">
include/AlevinUtils.hpp
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<li class="file-stats">
<a href="#af2b8b5096a067a33dd332bbfd1080ae3cf4763d">
include/AlignmentGroup.hpp
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<li class="file-stats">
<a href="#5cef8fa5ec1ece7a48a7915ced5deaf811bf19f5">
include/AlignmentLibrary.hpp
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<a href="#190d99cc5ab950958653ebc379ba8a35f8e86031">
include/BAMQueue.tpp
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<a href="#a9730033c96a73430dfa9e68a0a02623e62e903d">
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include/BAMUtils.hpp
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<a href="#27048b9f4b4bc7ae24299f0eb63849dddd8cebb3">
include/BarcodeGroup.hpp
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<a href="#ba21e28a4a0fb90d1a8bc698ffc1d6360721d2ef">
include/CollapsedCellOptimizer.hpp
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<li class="file-stats">
<a href="#9ae77fd7e7a3184b0ef7ca225128fc21e47e2238">
include/DedupUMI.hpp
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<a href="#54e7c89c31efd77245f0e28769a95f9f9065879e">
include/DistributionUtils.hpp
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<li class="file-stats">
<a href="#e37fb3c682d28a9b874eeff15aed1e64079a9767">
include/EquivalenceClassBuilder.hpp
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<h5>The diff was not included because it is too large.</h5>
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