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<h3>
Dylan Aïssi pushed to branch master
at <a href="https://salsa.debian.org/med-team/beagle">Debian Med / beagle</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/beagle/commit/0d3b277c8e838930860a1b94f4b2e10e0b4d19dc">0d3b277c</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-11-20T07:00:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.1-191108+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beagle/commit/91c1a0fd76ffd6e0695e8b856f3ef45f4705b753">91c1a0fd</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-11-20T07:00:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.1-191108+dfsg'
Update to upstream version '5.1-191108+dfsg'
with Debian dir 2f30039be37d85de58511522825726b3e197dfd1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beagle/commit/70db7119cda1578cec6d24f59a0f4a91267624c9">70db7119</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-11-20T07:01:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/changelog
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#e0076214c7cf4907b49761372eaa3202413f190f">
<span class="deleted-file">
−
beagleutil/Phase.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#21e2e24eb0204d47dfc1265291352d4231fa819e">
<span class="new-file">
+
blbutil/MultiThreadUtils.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#e0b91020f8e992ebb7ede4ba8cb317163a5340b7">
blbutil/SampleFileIt.java
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</li>
<li class="file-stats">
<a href="#569d1e1ae30f252e98526e6aa870ed406131b290">
blbutil/Utilities.java
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</li>
<li class="file-stats">
<a href="#b2ba9080612250531e5601745e2e52ed48f1770e">
bref/AsIsBref3Writer.java
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</li>
<li class="file-stats">
<a href="#88c53e80182ef20a8cdfed427d5e651d37907e75">
bref/Bref3.java
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</li>
<li class="file-stats">
<a href="#75b4875e136736cf8fa3756993e43d51ba5a980f">
bref/Bref3It.java
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<li class="file-stats">
<a href="#923ab2081306a60ce903c2304d7d5d6f3224175c">
bref/Bref3Reader.java
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</li>
<li class="file-stats">
<a href="#c25c6925c8263a9d278591050c88c7543eca43ee">
bref/BrefWriter.java
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</li>
<li class="file-stats">
<a href="#235afaa37fdb61b1d835aad391a3b55eb608864e">
bref/CompressBref3Writer.java
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</li>
<li class="file-stats">
<a href="#8858d04c3e071f8148d52b04a39944b5f4560a7a">
bref/SeqCoder3.java
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</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#67a867e14e93b445b6c7f4b319e9a70c9961e9a7">
imp/HaplotypeCoder.java
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<li class="file-stats">
<a href="#923f1b8e82851d3ec572b6c0fe2053ba7176c20c">
imp/ImpData.java
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<li class="file-stats">
<a href="#3ca7c61e1782c0aafcd8bc57803302b434469b7e">
imp/ImpIbs.java
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<li class="file-stats">
<a href="#315086b42467cd64d67b45236c874d197c068244">
imp/ImpStates.java
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<li class="file-stats">
<a href="#156b60cc697d7e2105fc5f6116490daeacee2f47">
imp/ImputedRecBuilder.java
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<li class="file-stats">
<a href="#d158c3582076a802a226c9ef95c7781d71642267">
imp/ImputedVcfWriter.java
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</li>
<li class="file-stats">
<a href="#2ad0efaccf66628e1858a4c133e8914e33eb2221">
main/Main.java
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</li>
<li class="file-stats">
<a href="#960732d02f743e5525a9c84bd179d277e390c9ba">
main/MainHelper.java
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<li class="file-stats">
<a href="#eb9d1a1acbc4ec0ffa4eeee52a6d83ce5c15c2e1">
main/Par.java
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<li class="file-stats">
<a href="#77afdd455e2101c62c298509ab3361f85d4ae176">
main/Pedigree.java
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</li>
<li class="file-stats">
<a href="#611062e8e142f9ef1d5f5200bb13b0a16611898e">
main/RunStats.java
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</li>
<li class="file-stats">
<a href="#5cd7995a7684c4895d668ddb8873a9fba68706d1">
main/WindowWriter.java
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</li>
<li class="file-stats">
<a href="#b8f76d361fad4dba776afd3a937f42920963a97e">
phase/EstPhase.java
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</li>
<li class="file-stats">
<a href="#07777d8f0265190c58c0ca3fad4559f401a7fd13">
phase/FixedPhaseData.java
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</li>
<li class="file-stats">
<a href="#deffeee20209b899ad68dc536a5f9f142ada4d5e">
phase/HapImputer.java
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</li>
<li class="file-stats">
<a href="#b723df8f13438be092b68fbbf9ecd2e03dd3c306">
phase/PhaseBaum1.java
</a>
</li>
<li class="file-stats">
<a href="#feb7a9a924cfaa0b13e7c2647499887d74f2b2bb">
phase/PhaseData.java
</a>
</li>
<li class="file-stats">
<a href="#d0875a14cecab64969d49fa0ec30b89961d311ed">
phase/PhaseLS.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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