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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/bbmap">Debian Med / bbmap</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/commit/765cf20ab8a3e4534e704490989e9ab97890dec4">765cf20a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-11-22T20:31:24Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 38.73+dfsg</pre>
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<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
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<li class="file-stats">
<a href="#b80124bb74209042a3a1bfac80165be9e46ff6f9">
a_sample_mt.sh
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</li>
<li class="file-stats">
<a href="#4717c99784e005a44f755d67425d9a2cfb843289">
addadapters.sh
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<li class="file-stats">
<a href="#bb99c91dddf712324948bb77e4432bafdd07bfe2">
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+
addssu.sh
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<li class="file-stats">
<a href="#4275e52f8422e373616a19f7b2745318d5d6935f">
<span class="new-file">
+
adjusthomopolymers.sh
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<li class="file-stats">
<a href="#12cc7b31159ddd898e9b3c078c83333bb1b1ab00">
analyzeaccession.sh
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<li class="file-stats">
<a href="#e463fa97b3ad8760b49cf0b08654d96aa72d6e84">
<span class="new-file">
+
applyvariants.sh
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<li class="file-stats">
<a href="#56336b8b18b9a01924f9921d0603ec2e8fdbe24a">
bbcms.sh
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<li class="file-stats">
<a href="#67d907d61087ac2bc1410f5791ecd5d94426cc74">
bbduk.sh
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<li class="file-stats">
<a href="#3a1986fa996843fd189501d65900ee801c1a9bf2">
calcmem.sh
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<li class="file-stats">
<a href="#d4a77f7446e8b2574d3bafe6219a1bfcf5c2d06e">
callgenes.sh
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<li class="file-stats">
<a href="#4a18c3c5eec989524e435c6521f755ab31034d3a">
clumpify.sh
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<li class="file-stats">
<a href="#595053368d8170ce2fc06b4f43eb36f103f53195">
comparesketch.sh
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<li class="file-stats">
<a href="#253a206cb08d757a947a7184d38b6f79645cf90f">
<span class="new-file">
+
consensus.sh
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<li class="file-stats">
<a href="#be7260b2e2b4ab59dbd69285dbc941c2cbcff3af">
current/align2/AbstractMapper.java
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<li class="file-stats">
<a href="#8023a4926ea3329eac15850095fd011835c0606d">
current/align2/BBMap.java
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<li class="file-stats">
<a href="#f50d097c627a469ad0ecf95d57afabb3405b2b27">
current/align2/BBMap5.java
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<li class="file-stats">
<a href="#36210f0aa49b80397ff11d10a459ae9daf6625ed">
current/align2/BBMapAcc.java
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<li class="file-stats">
<a href="#64e557b9d4b26716abcebbd933081d2b3039b6b5">
current/align2/BBMapPacBio.java
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<li class="file-stats">
<a href="#244ad82cdd9b818adc2a3fb9103c3c7beb7db2c9">
current/align2/BBMapPacBioSkimmer.java
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<li class="file-stats">
<a href="#0178ad043dc048c47fe7a4fa7dd135e198c6ec75">
current/assemble/AbstractProcessContigThread.java
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<li class="file-stats">
<a href="#649adf1519714691cc23b2803e10bdc684e80ca6">
<span class="new-file">
+
current/assemble/BubblePopper.java
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</a>
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<li class="file-stats">
<a href="#fa1d65f591bb73b0abeb925759caae419d88e951">
current/assemble/Contig.java
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<li class="file-stats">
<a href="#a8fec4c98c3acbe87f6ddee2098d91ec1c20851b">
current/assemble/Edge.java
</a>
</li>
<li class="file-stats">
<a href="#beb58a1ba4c4e20b84328d78ddbc5927ae238062">
current/assemble/Shaver1.java
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<li class="file-stats">
<a href="#d19c111fdd1ad62c85d79fd9ae84ebaa470ab51e">
current/assemble/Shaver2.java
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</li>
<li class="file-stats">
<a href="#c83b8870014d3f3c36343d260d6769bfe0926238">
current/assemble/TadPipe.java
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</li>
<li class="file-stats">
<a href="#7325505e925acb2556d8e0d25d4b41776875fc57">
current/assemble/Tadpole.java
</a>
</li>
<li class="file-stats">
<a href="#5b8e4cc34e5021e8eba5bbbd07fba52303fd55b2">
current/assemble/Tadpole1.java
</a>
</li>
<li class="file-stats">
<a href="#874193af52a8f8b9c2f65cd5f0d9c53412582435">
current/assemble/Tadpole2.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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