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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/53ab04392283172ee3ac50b07db046ac5f682a05">53ab0439</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-11-26T13:04:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.1.8</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/a5293ff52466fd0d8af9fd3e1953b6cb2dddd4dc">a5293ff5</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-11-26T13:05:21Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.1.8'
Update to upstream version '1.1.8'
with Debian dir dccece22a779c9ca1c16312e490da041b115be33</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/24238083aff27dfb5a7696fc885e916e09152ad8">24238083</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-11-26T13:17:20Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/ca3194e5e322a67a08cbb228b45716f01f2b7a64">ca3194e5</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-11-26T13:50:05Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updated TODO and d/control with insights from bioconda
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#d30b04166486087de34ff05cf278d3dd2ddd2360">
HISTORY.md
</a>
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<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
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<li class="file-stats">
<a href="#600a514c8c8a6ea15225d6b835012f64e6c85fb2">
artwork/logo.png
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<li class="file-stats">
<a href="#059a93c69080af2f6054c5324203b7af73cc5b83">
bcbio/bam/__init__.py
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<li class="file-stats">
<a href="#fb17eef4888c4f7198909ebc1616eb92a3fed380">
bcbio/chipseq/__init__.py
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<li class="file-stats">
<a href="#4eabad8cbe351e3e3d7466ee25d9d970b164368a">
bcbio/chipseq/macs2.py
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<li class="file-stats">
<a href="#fbfb96675c481efdacfedf0214b473e7d623d79c">
bcbio/chipseq/peaks.py
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<li class="file-stats">
<a href="#fee19f4f498a2b34eca43fa79376fa526f252577">
bcbio/heterogeneity/chromhacks.py
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<li class="file-stats">
<a href="#cb1999524a51a97bd40da890cd301d883550f995">
bcbio/install.py
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<li class="file-stats">
<a href="#f5ccb8a739885f7f0b20c8075bf02a335bbb6d30">
bcbio/ngsalign/alignprep.py
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<li class="file-stats">
<a href="#a1a1b6c48a9d8310804e0e666a6af78553f682f8">
bcbio/ngsalign/bowtie2.py
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<li class="file-stats">
<a href="#037a5da84cee54d04c6672861c844615a844912f">
bcbio/ngsalign/bwa.py
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<li class="file-stats">
<a href="#5eae78d8d65ceec04aed346c7bfecf92d6f8df0c">
bcbio/ngsalign/postalign.py
</a>
</li>
<li class="file-stats">
<a href="#3bc78861325eafbcc6318a5fe975950a26142070">
bcbio/pipeline/datadict.py
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<li class="file-stats">
<a href="#6a5842dd9e3c5daac8e6d62a34e4d60ab86b78bf">
bcbio/pipeline/run_info.py
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</li>
<li class="file-stats">
<a href="#5526acae3f49d559b15e5ff43bc0e9a0a9d3841e">
bcbio/qc/fastqc.py
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</li>
<li class="file-stats">
<a href="#b5f97c2465c41ae9654e19860697f479dc1cf205">
bcbio/variation/effects.py
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</li>
<li class="file-stats">
<a href="#ff77c88bc3b9fd8257f06fb347f577b7d3e4c85c">
bcbio/variation/population.py
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</li>
<li class="file-stats">
<a href="#38e9a1f988377830cea6624ef40fa333dd9174f6">
bcbio/variation/vardict.py
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</li>
<li class="file-stats">
<a href="#5694074bc1b19221ced477c3674e2f7a35d7d0e4">
config/genomes/BDGP6-resources.yaml
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<li class="file-stats">
<a href="#6d2cadb523932676c6f1437d5a369d5b90c31af1">
config/genomes/GRCh37-resources.yaml
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<li class="file-stats">
<a href="#cf0b5c032e667c56031f81667bdb1b9d9ef6a362">
config/genomes/GRCz11-resources.yaml
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<li class="file-stats">
<a href="#abbe8ece3bc04513d1b2317ce243e532ae3d3caa">
config/genomes/Sscrofa11.1-resources.yaml
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<li class="file-stats">
<a href="#6c3d8c10ec83b8cb08ab90491ed9d31625810383">
config/genomes/WBcel235-resources.yaml
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<li class="file-stats">
<a href="#50f937dedbe828b6883202c4302cd15e027693a2">
config/genomes/canFam3-resources.yaml
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</li>
<li class="file-stats">
<a href="#f3f838e42b35f39a90029d89947337ec58b1418a">
config/genomes/dm3-resources.yaml
</a>
</li>
<li class="file-stats">
<a href="#4d858b88b70a09c19f201d7d8edfdb6d979c4013">
config/genomes/galGal4-resources.yaml
</a>
</li>
<li class="file-stats">
<a href="#feed131f89893ff61e7bd1b941791558c255f866">
config/genomes/hg19-resources.yaml
</a>
</li>
<li class="file-stats">
<a href="#f930365c72dcb0aa83a9dd4b12caf798395a65ff">
config/genomes/hg38-noalt-resources.yaml
</a>
</li>
<li class="file-stats">
<a href="#234e8fcf6a3ef36167f45bd34532469e8aef57eb">
config/genomes/hg38-resources.yaml
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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