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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/b50e6f19c716aa9563e93645a3c2cd48194c2820">b50e6f19</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-10-19T12:01:29Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.1.7</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/53ab04392283172ee3ac50b07db046ac5f682a05">53ab0439</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-11-26T13:04:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.1.8</pre>
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<h4>30 changed files:</h4>
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<a href="#0834ae016f8fea5cff771880c0be1d55299732ff">
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CODE_OF_CONDUCT.md
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<li class="file-stats">
<a href="#d30b04166486087de34ff05cf278d3dd2ddd2360">
HISTORY.md
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<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
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<li class="file-stats">
<a href="#600a514c8c8a6ea15225d6b835012f64e6c85fb2">
artwork/logo.png
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<li class="file-stats">
<a href="#059a93c69080af2f6054c5324203b7af73cc5b83">
bcbio/bam/__init__.py
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<li class="file-stats">
<a href="#1739ba9205b7ef6c4fd30455b222cb9c371e9501">
bcbio/bam/coverage.py
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<li class="file-stats">
<a href="#182fba4769123c455cd02418f79d193a381ad1c4">
bcbio/bam/fastq.py
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<li class="file-stats">
<a href="#e518229f249f53b16d0dd891314f18afa565e3cb">
bcbio/broad/__init__.py
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<li class="file-stats">
<a href="#fb17eef4888c4f7198909ebc1616eb92a3fed380">
bcbio/chipseq/__init__.py
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<li class="file-stats">
<a href="#92799c57074000fce647627900cf88b09d79a6f8">
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bcbio/chipseq/antibodies.py
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<li class="file-stats">
<a href="#4eabad8cbe351e3e3d7466ee25d9d970b164368a">
bcbio/chipseq/macs2.py
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<li class="file-stats">
<a href="#fbfb96675c481efdacfedf0214b473e7d623d79c">
bcbio/chipseq/peaks.py
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<li class="file-stats">
<a href="#911a1520d19a460146d2a13f06313e889177f30d">
bcbio/distributed/ipythontasks.py
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<a href="#09d9e862a036e6807e58c2decc710d701ffc3ece">
bcbio/distributed/multitasks.py
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<li class="file-stats">
<a href="#24b10c4075c91fa8a08a9bf38d2e3451b81a5fb7">
bcbio/distributed/runfn.py
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<li class="file-stats">
<a href="#cd08dceb71bc9bd7ab94728fc3f310e15324b176">
bcbio/heterogeneity/bubbletree.py
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<a href="#fee19f4f498a2b34eca43fa79376fa526f252577">
bcbio/heterogeneity/chromhacks.py
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<li class="file-stats">
<a href="#21de3916271e785a8f3265ee5ad39597e376e1fe">
bcbio/hla/optitype.py
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<li class="file-stats">
<a href="#1ef80d5e67c000a5c2448e6dc3b7c172e118b794">
bcbio/illumina/flowcell.py
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<li class="file-stats">
<a href="#183c8f99ac39f0fb348d40a8735debf81dc423ec">
bcbio/illumina/machine.py
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<a href="#cb1999524a51a97bd40da890cd301d883550f995">
bcbio/install.py
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<li class="file-stats">
<a href="#f5ccb8a739885f7f0b20c8075bf02a335bbb6d30">
bcbio/ngsalign/alignprep.py
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<li class="file-stats">
<a href="#df11eaca928825aa93db95fe7b7adf1aa7c3e786">
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bcbio/ngsalign/bismark.py
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<li class="file-stats">
<a href="#a1a1b6c48a9d8310804e0e666a6af78553f682f8">
bcbio/ngsalign/bowtie2.py
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<li class="file-stats">
<a href="#254ae608a9d2a6b7d76baaf83360ad98bc498fef">
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bcbio/ngsalign/bsmap.py
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<li class="file-stats">
<a href="#037a5da84cee54d04c6672861c844615a844912f">
bcbio/ngsalign/bwa.py
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<li class="file-stats">
<a href="#5eae78d8d65ceec04aed346c7bfecf92d6f8df0c">
bcbio/ngsalign/postalign.py
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<li class="file-stats">
<a href="#bbb7842f2be9690f4ae67a1de2c07f322d6e261e">
bcbio/ngsalign/star.py
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<li class="file-stats">
<a href="#fb1771124cfd58b2bad95a99b8cf42f0adde9eee">
bcbio/pipeline/alignment.py
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<li class="file-stats">
<a href="#3bc78861325eafbcc6318a5fe975950a26142070">
bcbio/pipeline/datadict.py
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<h5>The diff was not included because it is too large.</h5>
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