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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/last-align">Debian Med / last-align</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/commit/985cd10fd545b2e12c0b3e8f6b89fc20f55ceea1">985cd10f</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-10-26T15:57:50Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/commit/901bee695600090bad207d80c126e90649d406e3">901bee69</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-10-26T15:57:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 992</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/commit/fea9790fff87734c5f3cfde6f92cf6004041ac8e">fea9790f</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-10-26T15:57:52Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/992'
Update to upstream version '992'
with Debian dir 5d0fc88148bc29fe1f0d81bcb4e4b47d13877bd9</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/commit/634e8591914d45369065a52b92ac76807c5ea9b7">634e8591</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T09:33:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Leftover changes
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/commit/8cf290a821ae0b23c8d8ee6ca577c55c4042d935">8cf290a8</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T09:34:58Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Patching Makefile
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/commit/80b78351ab5c9d7e3d252e3e078daf38d3cf1a93">80b78351</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T09:36:07Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'master' of https://salsa.debian.org/med-team/last-align
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/commit/47c9490060c734037afbe4dff2ee83634ab063a7">47c94900</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T09:38:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">build error - new upstream avail, no fix
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/commit/536648e62e55b3d69e92753739ff694d1bda11b8">536648e6</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T09:38:26Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1021</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/commit/1ed139535991550a29ea82d09054c58b5fe0f545">1ed13953</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T09:38:26Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/commit/7c773123f775aed20835a17e835afc653dab42b2">7c773123</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T09:38:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1021'
Update to upstream version '1021'
with Debian dir f02d2a783a2f31340858d5a462f01e72b1134d65</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/commit/eed5b95d5b949657670d1e366c492efc165b6d5d">eed5b95d</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T09:44:13Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added new ref
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/commit/59fcb2ca6802965e1bdfea41ca133b0dbe15779c">59fcb2ca</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T09:51:43Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/last-align/commit/3d57431d536b097d0761358c89a477e1f1ccf56d">3d57431d</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T10:11:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fixed path in last-train - ready to upload
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#57bf262130f956caf76c405086f0815caf4e0a89">
ChangeLog.txt
</a>
</li>
<li class="file-stats">
<a href="#519a6ec9b62c2075ebb641ff8211d551613dd9ff">
<span class="new-file">
+
build/gc-inc.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#20dc701399f7ae22d11b551a33756b59e15821db">
data/BL80.mat
</a>
</li>
<li class="file-stats">
<a href="#e3047b42fb5a50570d596538ff854f6f3d0bef64">
<span class="new-file">
+
data/PAM10.mat
</span>
</a>
</li>
<li class="file-stats">
<a href="#a69c007d3ab9ede2e337635ede15219fb36cf178">
data/PAM30.mat
</a>
</li>
<li class="file-stats">
<a href="#935da6fea33504a81369819e86bcde186ed00f8c">
<span class="new-file">
+
data/gc.prt
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
debian/patches/2to3.patch
</a>
</li>
<li class="file-stats">
<a href="#3aa5932f37417bf29a460d19625313d84f634221">
<span class="new-file">
+
debian/patches/helpMakefiles.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#2827a88da893d4d9713a74ea9ece8d5c14a78d93">
doc/last-evalues.html
</a>
</li>
<li class="file-stats">
<a href="#15d31d5c4b02587fa590f72537ff73f2165bd0fb">
doc/last-evalues.txt
</a>
</li>
<li class="file-stats">
<a href="#071dd33ba2dde1add1fc1ac11717007123b2d27f">
doc/last-matrices.html
</a>
</li>
<li class="file-stats">
<a href="#b9467e9bc47690e537ada396f00745c23b9a9154">
doc/last-matrices.txt
</a>
</li>
<li class="file-stats">
<a href="#bf068196d49b041029d9a269a6e3d52acda15f9f">
doc/last-train.html
</a>
</li>
<li class="file-stats">
<a href="#03dd50d6a64beb7787e3bcc9eb6da79c482759d5">
doc/last-train.txt
</a>
</li>
<li class="file-stats">
<a href="#1d2db1d5c1263541e178e5c6d1a664dcaee43e97">
doc/lastal.html
</a>
</li>
<li class="file-stats">
<a href="#30d864ed8925787ee70643db49814772753a5f2c">
doc/lastal.txt
</a>
</li>
<li class="file-stats">
<a href="#0a6f228c5aa04e4e51759df327427fcf703fa8ae">
examples/multiMito.maf
</a>
</li>
<li class="file-stats">
<a href="#0c0610d12d971107a85160c6a927e94a1062a01a">
makefile
</a>
</li>
<li class="file-stats">
<a href="#37ef3bfb2f847a5a03a3da6d653afee2ea7e05b0">
scripts/last-train
</a>
</li>
<li class="file-stats">
<a href="#5e55dbeefff2057b414960d9467d183920e31b8a">
src/Alignment.cc
</a>
</li>
<li class="file-stats">
<a href="#76a46dca9f85ee73b2a8d67a89f4b9bf80c34b4b">
src/Centroid.cc
</a>
</li>
<li class="file-stats">
<a href="#7cc18ac8f8022614b0ff31ec1eeb4152cd88880e">
src/Centroid.hh
</a>
</li>
<li class="file-stats">
<a href="#38e88d72aa956d3886597351d58b37469947a653">
src/CyclicSubsetSeed.hh
</a>
</li>
<li class="file-stats">
<a href="#8f014a93cf121af8fe88d03244d4d4b173d32a6d">
src/GappedXdropAligner.cc
</a>
</li>
<li class="file-stats">
<a href="#7dc5c3172a020d4f7642b87bcfe987675bd222a7">
src/GappedXdropAligner.hh
</a>
</li>
<li class="file-stats">
<a href="#30d72e7e81ec011dcda59c2395cb78f718d054e4">
src/GappedXdropAligner2qual.cc
</a>
</li>
<li class="file-stats">
<a href="#e75886b250f69fee392d9c70ddf2853930e49922">
src/GappedXdropAligner3frame.cc
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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