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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/diamond-aligner">Debian Med / diamond-aligner</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/commit/2809b67ea9906e49d49f62d2fbb7e9fe6f86d460">2809b67e</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T23:17:24Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.9.29+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/commit/86e0c8ecfd1e738b09b157b6804421b4b7bdb8f8">86e0c8ec</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T23:17:24Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/commit/96a49a965cb81746d742f40a431ba0d4c25c4e58">96a49a96</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T23:17:25Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.9.29+dfsg'
Update to upstream version '0.9.29+dfsg'
with Debian dir 69ce4543d3e4a3bab2eed71e59ebd8c35a2fa366</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/commit/e8642d330bf255334d1c6a26e1df6d2214571233">e8642d33</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-04T23:19:05Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#ba308c53c268704c3008f5e2e6e8129f9f6bf3fe">
src/ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#f76380e3e66f9453de89e5ac198478544cf1e6e4">
src/align/align.cpp
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</li>
<li class="file-stats">
<a href="#f1fae2471d3aa9a609a9966be5b7ab4c0f58fa75">
src/align/align.h
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</li>
<li class="file-stats">
<a href="#c8d7bd122d50035cfb1627dbd9659f00b8137ded">
src/align/banded_swipe_pipeline.cpp
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</li>
<li class="file-stats">
<a href="#6680d5fa25d641cc5dca7c5a7003df5e6724affc">
src/align/greedy_pipeline.cpp
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</li>
<li class="file-stats">
<a href="#bcbb7a1c70650f87f552b2d9af114f56ce1cbe97">
src/align/query_mapper.cpp
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</li>
<li class="file-stats">
<a href="#1d6f489bed314aa9dc04402c527ab01ca83d62f6">
src/align/query_mapper.h
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<li class="file-stats">
<a href="#633a6c17b2a98479834558229cc20e2ad3de2c8d">
src/align/swipe_pipeline.cpp
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</li>
<li class="file-stats">
<a href="#76d5a97c09cca591280144de40f9c04a5ec57ef7">
src/basic/basic.cpp
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<li class="file-stats">
<a href="#fe8c534c15ea9cf93547993244c3ab903c4895ff">
src/basic/config.cpp
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<li class="file-stats">
<a href="#79a175a8b141cc4f06683108fcd39b79a555f1cd">
src/basic/config.h
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<li class="file-stats">
<a href="#da280a51d91809345347036c4e31920b2c744ab7">
src/basic/const.h
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<li class="file-stats">
<a href="#f9492756ecc3a6486c8d8a74972ab3c60ae604a2">
src/basic/match.h
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<li class="file-stats">
<a href="#a0fd434dbcb3b985a7a23257cbee2d7f05729425">
src/data/taxonomy.h
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</li>
<li class="file-stats">
<a href="#9d22f6f747f50ff2a87acaeb03e72230517c8047">
src/dp/comp_based_stats.cpp
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</li>
<li class="file-stats">
<a href="#681060858f53613aebc0e374d1943b837e701d0f">
src/dp/dp.h
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</li>
<li class="file-stats">
<a href="#84705b8e1746b2b510d5ff81239a5cc105c2e040">
src/dp/score_vector.h
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</li>
<li class="file-stats">
<a href="#503a0d0a04d792d79a548b340f7e1a9201a8d375">
<span class="new-file">
+
src/dp/score_vector_int16.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#fca48027490c3c37433bb7bfe054875f42886c49">
<span class="new-file">
+
src/dp/score_vector_int8.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#36c9568495b5e92087ac3999322cf44d3d5cda7d">
src/dp/swipe/banded_3frame_swipe.cpp
</a>
</li>
<li class="file-stats">
<a href="#be3d24d6cf391179c704e6b81851176bc4e0a987">
src/dp/swipe/banded_swipe.cpp
</a>
</li>
<li class="file-stats">
<a href="#7360c8d9478f5beaf9c35dea8a50535ec74278b3">
src/dp/swipe/swipe.cpp
</a>
</li>
<li class="file-stats">
<a href="#f029c9266faec97f105981cc4f88e78d3b78027b">
src/dp/swipe/swipe.h
</a>
</li>
<li class="file-stats">
<a href="#a06527298ef02c89fb54496eac3383e92599dcb7">
src/dp/swipe/swipe_wrapper.cpp
</a>
</li>
<li class="file-stats">
<a href="#18dfda8832c0aa49538985ad5f5809874b9049c2">
src/dp/swipe/target_iterator.h
</a>
</li>
<li class="file-stats">
<a href="#886ff73257cc2fb53eac3407b1ad5694ed69a174">
src/output/output.h
</a>
</li>
<li class="file-stats">
<a href="#7863fd2cdf1ec9a2526f933e45a8e91b54482c4a">
src/output/output_sink.cpp
</a>
</li>
<li class="file-stats">
<a href="#aa612a337fc66ae885c76e4eb2a819dfd69117f8">
src/run/double_indexed.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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