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GitLab

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<h3>

Andreas Tille pushed to branch master

at <a href="https://salsa.debian.org/med-team/python-skbio">Debian Med / python-skbio</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/python-skbio/commit/c17b13cf08f2359488a19d5e47f949b4836b953d">c17b13cf</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2019-12-04T08:56:04Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Versioned Build-Depends: python3-scipy (>= 1.3.3)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/python-skbio/commit/80886b861588895caccb0a73f2aa225ed44efd56">80886b86</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2019-12-04T09:00:45Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Really add upstream patch "Build fixes for pandas 0.25.0 and scipy 1.3.0 (#1665)"

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/python-skbio/commit/38eb1d56eb8f08c1b988f4479dc497296c8c9d3d">38eb1d56</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2019-12-04T09:01:10Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper-compat 12

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/python-skbio/commit/f97c6e58f8cd00a1a17ae8b249ba72b5e3cd1717">f97c6e58</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2019-12-04T09:01:14Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.4.1

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/python-skbio/commit/9230fad6b37d366b9c9a7aa0987d22dc15d7a36b">9230fad6</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2019-12-04T09:01:17Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Repository, Repository-Browse.

Fixes lintian: upstream-metadata-file-is-missing

See https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html for more details.

</pre>

</li>

</ul>

<h4>6 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">

debian/changelog

</a>

</li>

<li class="file-stats">

<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">

<span class="deleted-file">

−

debian/compat

</span>

</a>

</li>

<li class="file-stats">

<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">

debian/control

</a>

</li>

<li class="file-stats">

<a href="#590400d90f6f352879f38cf64721962ff4e44f93">

<span class="new-file">

+

debian/patches/9c061da7e2746aee403b41621f71b118ce5c52f8.patch

</span>

</a>

</li>

<li class="file-stats">

<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">

debian/patches/series

</a>

</li>

<li class="file-stats">

<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">

<span class="new-file">

+

debian/upstream/metadata

</span>

</a>

</li>

</ul>

<h4>Changes:</h4>

<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">

<a href="https://salsa.debian.org/med-team/python-skbio/compare/e6d6590dffe3ec014c11933ca2f37c34ef334c39...9230fad6b37d366b9c9a7aa0987d22dc15d7a36b#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>

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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

1

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-skbio (0.5.5-3) UNRELEASED; urgency=medium</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

2

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

3

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">  * Apply patch from upstream titled</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

4

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">     "WIP: Build fixes for pandas 0.25.0 and scipy 1.3.0"</span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

5

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">  * Versioned Build-Depends: python3-scipy (>= 1.3.3)</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

6

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">  * debhelper-compat 12</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

7

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">  * Standards-Version: 4.4.1</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

8

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">  * Set upstream metadata fields: Repository, Repository-Browse.</span>

</pre>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

9

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

10

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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org>  Thu, 14 Nov 2019 09:31:50 +0100</span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

11

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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1

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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

12

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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">python-skbio (0.5.5-2) unstable; urgency=medium</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

2

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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

13

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3

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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

14

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">  * Upstream has fixed numpy issue</span>

</pre>

</td>

</tr>

</table>

<br>

</li>

<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">

<a href="https://salsa.debian.org/med-team/python-skbio/compare/e6d6590dffe3ec014c11933ca2f37c34ef334c39...9230fad6b37d366b9c9a7aa0987d22dc15d7a36b#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>

deleted

</a>

<hr>

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1

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">12</span></pre>

</td>

</tr>

</table>

<br>

</li>

<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">

<a href="https://salsa.debian.org/med-team/python-skbio/compare/e6d6590dffe3ec014c11933ca2f37c34ef334c39...9230fad6b37d366b9c9a7aa0987d22dc15d7a36b#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>

<hr>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ Uploaders: Tim Booth <tbooth@ceh.ac.uk>,</td>

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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">           Kevin Murray <kdmfoss@gmail.com></span>

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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: python</span>

</pre>

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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Priority: optional</span>

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<td class="diff-line-num new_line old" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 12~</span>),</span>

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<td class="diff-line-num new old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 12</span>),</span>

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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">               dh-python,</span>

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<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">               ipython3,</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">               python3-all-dev,</span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,13 +22,13 @@ Build-Depends: debhelper (>= 12~),</td>

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<td class="diff-line-num old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">               python3-numpy (>= 1:1.9.2),</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">               python3-numpydoc,</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">               python3-pandas (>= 0.19.2),</span>

</pre>

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<td class="diff-line-num new_line old" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext">               python3-scipy,</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">               python3-scipy<span class="idiff left right"> (>= 1.3.3)</span>,</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">               python3-setuptools,</span>

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<td class="diff-line-num old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">               python3-sklearn,</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">               python3-sphinx,</span>

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<td class="diff-line-num old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">               python3-sphinx-bootstrap-theme,</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">               libssw-dev</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">3.0</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">4.1</span></span>

</pre>

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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/python-skbio</span>

</pre>

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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/python-skbio.git</span>

</pre>

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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">Homepage: https://github.com/biocore/scikit-bio</span>

</pre>

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<br>

</li>

<li id="590400d90f6f352879f38cf64721962ff4e44f93">

<a href="https://salsa.debian.org/med-team/python-skbio/compare/e6d6590dffe3ec014c11933ca2f37c34ef334c39...9230fad6b37d366b9c9a7aa0987d22dc15d7a36b#590400d90f6f352879f38cf64721962ff4e44f93"><strong>debian/patches/9c061da7e2746aee403b41621f71b118ce5c52f8.patch</strong></a>

<hr>

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">From 9c061da7e2746aee403b41621f71b118ce5c52f8 Mon Sep 17 00:00:00 2001</span></span>

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">From: Daniel McDonald <danielmcdonald@ucsd.edu></span></span>

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Date: Mon, 19 Aug 2019 15:27:12 -0700</span></span>

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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Subject: [PATCH] WIP: Build fixes for pandas 0.25.0 and scipy 1.3.0 (#1665)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>

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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">* Build fixes for pandas 0.25.0 and scipy 1.3.0</span>

</pre>

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"></span>

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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff">* Build fixes for pandas 0.25.0 and scipy 1.3.0</span>

</pre>

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"></span>

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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff">* Build fixes for pandas 0.25.0 and scipy 1.3.0</span>

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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="p">---</span></span>

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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> skbio/stats/distance/tests/test_mantel.py | 8 ++++----</span>

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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> skbio/stats/evolve/_hommola.py            | 4 ++--</span>

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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> skbio/stats/power.py                      | 4 ++--</span>

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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> 3 files changed, 8 insertions(+), 8 deletions(-)</span>

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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"></span>

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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff">--- a/skbio/stats/distance/tests/test_mantel.py</span>

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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/skbio/stats/distance/tests/test_mantel.py</span></span>

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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="p">@@ -186,7 +186,7 @@</span> class MantelTests(MantelTestData):</span>

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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff">         for method in self.methods:</span>

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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff">             obs = mantel(self.minx, self.minx, method=method,</span>

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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff">                          alternative='less')</span>

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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-            self.assertEqual(obs, (1, 1, 3))</span></span>

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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            npt.assert_almost_equal(obs, (1, 1, 3))</span></span>

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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> </span>

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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff">         np.random.seed(0)</span>

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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> </span>

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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="p">@@ -247,15 +247,15 @@</span> class MantelTests(MantelTestData):</span>

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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff">             # distances</span>

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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff">             obs = mantel(self.miny, self.no_variation, method='pearson',</span>

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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff">                          alternative=alt)</span>

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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-            npt.assert_equal(obs, (0.0, 1.0, 3))</span></span>

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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            npt.assert_equal(obs, (np.nan, np.nan, 3))</span></span>

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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> </span>

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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff">             obs = mantel(self.no_variation, self.miny, method='pearson',</span>

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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff">                          alternative=alt)</span>

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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-            npt.assert_equal(obs, (0.0, 1.0, 3))</span></span>

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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            npt.assert_equal(obs, (np.nan, np.nan, 3))</span></span>

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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"> </span>

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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff">             obs = mantel(self.no_variation, self.no_variation,</span>

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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff">                          method='pearson', alternative=alt)</span>

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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-            npt.assert_equal(obs, (1.0, 1.0, 3))</span></span>

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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+            npt.assert_equal(obs, (np.nan, np.nan, 3))</span></span>

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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"> </span>

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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff">     def test_no_variation_spearman(self):</span>

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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff">         exp = (np.nan, np.nan, 3)</span>

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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/skbio/stats/evolve/_hommola.py</span></span>

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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/skbio/stats/evolve/_hommola.py</span></span>

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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"><span class="p">@@ -126,8 +126,8 @@</span> def hommola_cospeciation(host_dist, par_</span>

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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"> </span>

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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff">     >>> corr_coeff, p_value, perm_stats = hommola_cospeciation(</span>

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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff">     ...     hdist, pdist, interaction, permutations=99)</span>

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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-    >>> corr_coeff</span></span>

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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-    0.83170965463247903</span></span>

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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+    >>> round(corr_coeff, 8)</span></span>

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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+    0.83171097</span></span>

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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"> </span>

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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff">     In this case, the host distances have a fairly strong positive correlation</span>

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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff">     with the symbiont distances. However, this may also reflect structure</span>

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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/skbio/stats/power.py</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/skbio/stats/power.py</span></span>

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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="p">@@ -84,8 +84,8 @@</span> Now, let's use random sampling to estima</span>

</pre>

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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"> the first distribution.</span>

</pre>

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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"> </span>

</pre>

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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"> >>> samples = [ind, dep]</span>

</pre>

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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">->>> f(samples)</span></span>

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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-3.6459452596563003e-08</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+>>> round(f(samples), 6)</span></span>

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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+3.645945e-08</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"> </span>

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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"> In `subsample_power`, we can maintain a paired relationship between samples</span>

</pre>

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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"> by setting `draw_mode` to "matched". We can also set our critical value, so</span></pre>

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<br>

</li>

<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">

<a href="https://salsa.debian.org/med-team/python-skbio/compare/e6d6590dffe3ec014c11933ca2f37c34ef334c39...9230fad6b37d366b9c9a7aa0987d22dc15d7a36b#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,3 +3,4 @@ mathjax-path</td>

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3

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3

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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">0003-Cherry-pick-upstream-fix-for-numpy-transition.patch</span>

</pre>

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4

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4

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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">no_privacy_breach_logo.patch</span>

</pre>

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5

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5

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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">6497020.patch</span>

</pre>

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6

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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">9c061da7e2746aee403b41621f71b118ce5c52f8.patch</span></pre>

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</table>

<br>

</li>

<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">

<a href="https://salsa.debian.org/med-team/python-skbio/compare/e6d6590dffe3ec014c11933ca2f37c34ef334c39...9230fad6b37d366b9c9a7aa0987d22dc15d7a36b#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>

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1

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Repository: https://github.com/biocore/scikit-bio</span>

</pre>

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2

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Repository-Browse: https://github.com/biocore/scikit-bio</span></pre>

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