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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/gatb-core">Debian Med / gatb-core</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/2d9c898dbd16dea3c5e6cfcd0a7b23ae9c8f378d">2d9c898d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-05T11:31:30Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Changes in symbols file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/61e2415d8d348d429b8f44d2693e52421dd6c65a">61e2415d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-05T11:33:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bump Debian own invented SOVERSION due to massive changes in upstream ABI
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/036c6f89df4ebf1b60ead1abff2e59241fcb4beb">036c6f89</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-05T11:59:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#40272fa450a1eca23f528c7b44d451906d567bf9">
debian/libgatbcore2.symbols.amd64
</a>
</li>
<li class="file-stats">
<a href="#a594803cedfe48d71f4af12f7013ff549bf13a98">
debian/patches/set_soversion.patch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/gatb-core/compare/c58b23ef69cbe45b0c25effd4d5d8410e7bfb1ad...036c6f89df4ebf1b60ead1abff2e59241fcb4beb#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">gatb-core (1.4.1+git20191130.664696c+dfsg-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">gatb-core (1.4.1+git20191130.664696c+dfsg-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">  [ Steffen Moeller ]</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">  * Team upload.</span>
</pre>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">  * New upstream version</span>
</pre>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">  * Standards-Version: 4.4.1</span>
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">  * Set upstream metadata fields: Repository-Browse.</span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">  * Remove obsolete fields Name from debian/upstream/metadata.</span>
</pre>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">  * FTBFS: Problem with symbols files, I presume</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">  [ Andreas Tille ]</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">  * Bump Debian own invented SOVERSION due to massive changes in upstream</span>
</pre>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">    ABI</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> -- <span class="idiff left right">Steffen Moeller <moeller@debian.org>  Thu, 05 Dec 2019 00:23:01</span> +0100</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> -- <span class="idiff left right">Andreas Tille <tille@debian.org>  Thu, 05 Dec 2019 12:34:00</span> +0100</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">gatb-core (1.4.1+git20190813.a73b6dd+dfsg-1) unstable; urgency=medium</span>
</pre>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
</pre>
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</li>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/gatb-core/compare/c58b23ef69cbe45b0c25effd4d5d8410e7bfb1ad...036c6f89df4ebf1b60ead1abff2e59241fcb4beb#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
<hr>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,7 +37,7 @@ Description: Genome Analysis Toolbox with de-Bruijn graph</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> exist a set of ready-to-use tools relying on GATB-CORE</span>
</pre>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> library: see https://gatb.inria.fr/software/</span>
</pre>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line old" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext">Package: libgatbcore<span class="idiff left right">2</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">Package: libgatbcore<span class="idiff left right">3</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext">Architecture: any</span>
</pre>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">Section: libs</span>
</pre>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -62,7 +62,7 @@ Architecture: any</td>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext">Section: libdevel</span>
</pre>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext">         ${misc:Depends},</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext">         libgatbcore<span class="idiff left right">2</span> (= ${binary:Version})</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext">         libgatbcore<span class="idiff left right">3</span> (= ${binary:Version})</span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext">Description: development library of the Genome Analysis Toolbox</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> The GATB-CORE project provides a set of highly efficient</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> algorithms to analyse NGS data sets. These methods enable</span>
</pre>
</td>
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</table>
<br>
</li>
<li id="40272fa450a1eca23f528c7b44d451906d567bf9">
<a href="https://salsa.debian.org/med-team/gatb-core/compare/c58b23ef69cbe45b0c25effd4d5d8410e7bfb1ad...036c6f89df4ebf1b60ead1abff2e59241fcb4beb#40272fa450a1eca23f528c7b44d451906d567bf9"><strong>debian/libgatbcore2.symbols.amd64</strong></a>
The diff for this file was not included because it is too large.
<br>
</li>
<li id="a594803cedfe48d71f4af12f7013ff549bf13a98">
<a href="https://salsa.debian.org/med-team/gatb-core/compare/c58b23ef69cbe45b0c25effd4d5d8410e7bfb1ad...036c6f89df4ebf1b60ead1abff2e59241fcb4beb#a594803cedfe48d71f4af12f7013ff549bf13a98"><strong>debian/patches/set_soversion.patch</strong></a>
<hr>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,7 +9,7 @@ Description: Invent soversion 0 since upstream does not set soversion</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> set_target_properties  (gatbcore-static   PROPERTIES OUTPUT_NAME  gatbcore  clean_direct_output 1)</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-set_target_properties (gatbcore-dynamic  PROPERTIES OUTPUT_NAME  gatbcore  clean_direct_output 1)</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+set_target_properties (gatbcore-dynamic  PROPERTIES OUTPUT_NAME  gatbcore  SOVERSION <span class="idiff left right">2</span>   clean_direct_output 1)</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+set_target_properties (gatbcore-dynamic  PROPERTIES OUTPUT_NAME  gatbcore  SOVERSION <span class="idiff left right">3</span>   clean_direct_output 1)</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"> ################################################################################</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"> #  INSTALLATION </span></pre>
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