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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/libtabixpp">Debian Med / libtabixpp</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/libtabixpp/commit/6f269a28e008a608320f8346f05da5cc5c101fc4">6f269a28</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-12-13T16:35:41Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add hardening patch & ship symbols
</pre>
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<h4>5 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#da189da796930c68a4766567274afe0534a32c30">
<span class="new-file">
+
debian/libtabixpp0.symbols
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<li class="file-stats">
<a href="#d6c09299b1f914372840e8fd6fcc850f8a11b236">
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+
debian/patches/hardening
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/libtabixpp/commit/6f269a28e008a608320f8346f05da5cc5c101fc4#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">libtabixpp (1.0.0-5) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libtabixpp (1.0.0-5) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> [ Jelmer Vernooij ]</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * Use secure copyright file specification URI.</span>
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> -- Jelmer Vernooij <jelmer@debian.org> Fri, 26 Oct 2018 01:55:52 +0000</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> [ Michael R. Crusoe ]</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Add patch to enable hardening.</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Ship libtabixpp.symbols</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Fri, 13 Dec 2019 17:07:38 +0100</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">libtabixpp (1.0.0-4) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/libtabixpp/commit/6f269a28e008a608320f8346f05da5cc5c101fc4#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,11 +32,11 @@ Package: libtabixpp-dev</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">Multi-Arch: same</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">Section: libdevel</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> libtabixpp0 (= ${binary:Version}),</span>
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38
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> libhts-dev,</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> zlib1g-dev</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> zlib1g-dev,</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> ${devlibs:Depends}</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext">Pre-Depends: ${misc:Pre-Depends}</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext">Provides: libtabixpp-dev</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">Description: C++ wrapper to tabix indexer (development files)</span>
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<a href="https://salsa.debian.org/med-team/libtabixpp/commit/6f269a28e008a608320f8346f05da5cc5c101fc4#da189da796930c68a4766567274afe0534a32c30"><strong>debian/libtabixpp0.symbols</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libtabixpp.so.0 libtabixpp0 #MINVER#</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> _ZN5Tabix11getNextLineERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.0.0</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> _ZN5Tabix9getHeaderERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.0.0</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> _ZN5Tabix9setRegionERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.0.0</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> _ZN5TabixC1ERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.0.0</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> _ZN5TabixC1Ev@Base 1.0.0</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> _ZN5TabixC2ERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.0.0</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> _ZN5TabixC2Ev@Base 1.0.0</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.0.0</span></pre>
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<a href="https://salsa.debian.org/med-team/libtabixpp/commit/6f269a28e008a608320f8346f05da5cc5c101fc4#d6c09299b1f914372840e8fd6fcc850f8a11b236"><strong>debian/patches/hardening</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Michael R. Crusoe <michael.crusoe@gmail.com></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Description: enable hardening flags passthrough</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- libtabixpp.orig/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ libtabixpp/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">@@ -17,12 +17,12 @@</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> .SUFFIXES:.c .o</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> .c.o:</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CC) -c $(CXXFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) $(CPPFLAGS) -c $(CXXFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@</span></span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> all: $(PROG) libtabixpp.so.$(SONUMBER) libtabixpp.a</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> tabix.o: tabix.cpp tabix.hpp</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CXX) $(CXXFLAGS) -c tabix.cpp $(INCLUDES)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CXX) $(CPPFLAGS) $(CXXFLAGS) -c tabix.cpp $(INCLUDES)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> libtabixpp.a: tabix.o</span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> ar rcs $@ $<</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="p">@@ -31,7 +31,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> $(CXX) -shared -o $@ $< -fPIC -Wl,-soname,libtabixpp.so.$(SONUMBER) $(LDFLAGS) -lhts</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> tabix++: tabix.o main.cpp</span>
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<td class="diff-line-num new new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CXX) $(CXXFLAGS) -o $@ main.cpp tabix.o $(INCLUDES) $(LIBPATH) \</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CXX) $(LDFLAGS) $(CPPFLAGS) $(CXXFLAGS) -o $@ main.cpp tabix.o $(INCLUDES) $(LIBPATH) \</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> -lhts -lpthread -lm -lz</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> cleanlocal:</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/libtabixpp/commit/6f269a28e008a608320f8346f05da5cc5c101fc4#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">build_shared_lib_with_debian_htslib.patch</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">hardening</span></pre>
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