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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/htslib">Debian Med / htslib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/htslib/commit/11a677cf55f2ab4b9dcdb9375003f77bc74807e5">11a677cf</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-12-13T09:54:41Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix check for config.mk.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htslib/commit/b03a6b147091dc9f1d25a31a7383137764db90cd">b03a6b14</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-12-13T10:00:08Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Simplified arch-independent build
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htslib/commit/52415fa2e6ac93725e7c2edfe3d307011a3f8ee2">52415fa2</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-12-13T10:33:20Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">rename libhts2 to libht3 & release 1.10-2
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<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#320e0a1f712271d8a80729a499fdcfd9c66d5fb3">
<span class="deleted-file">
−
debian/libhts2.symbols
</span>
</a>
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<li class="file-stats">
<a href="#2f5814012a79d3a08214bb3007efa3b3a199233c">
debian/libhts2.install
→
debian/libhts3.install
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<li class="file-stats">
<a href="#6acd856226cbcb52e9d738b091e27200d6abb246">
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+
debian/libhts3.symbols
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/htslib/compare/bc910b7a1257cc17df26465f9d00eb0d3e92bc80...52415fa2e6ac93725e7c2edfe3d307011a3f8ee2#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">htslib</span> <span class="p">(</span><span class="m" style="color: #099;">1.10</span><span class="p">-</span><span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">check</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">config</span><span class="p">.</span><span class="n" style="color: #333;">mk</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Simplified</span> <span class="n" style="color: #333;">arch</span><span class="p">-</span><span class="n" style="color: #333;">independent</span> <span class="n" style="color: #333;">build</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">libhts2</span> <span class="p">-></span> <span class="n" style="color: #333;">libhts3</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">match</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">new</span> <span class="n" style="color: #333;">SONAME</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Update</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">symbols</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">well</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Michael</span> <span class="n" style="color: #333;">R</span><span class="p">.</span> <span class="n" style="color: #333;">Crusoe</span> <span class="p"><</span><span class="n" style="color: #333;">michael</span><span class="p">.</span><span class="n" style="color: #333;">crusoe</span><span class="p">@</span><span class="n" style="color: #333;">gmail</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">></span> <span class="n" style="color: #333;">Fri</span><span class="p">,</span> <span class="m" style="color: #099;">13</span> <span class="n" style="color: #333;">Dec</span> <span class="m" style="color: #099;">2019</span> <span class="m" style="color: #099;">11</span><span class="p">:</span><span class="m" style="color: #099;">04</span><span class="p">:</span><span class="m" style="color: #099;">33</span> <span class="p">+</span><span class="m" style="color: #099;">0100</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"><span class="n" style="color: #333;">htslib</span> <span class="p">(</span><span class="m" style="color: #099;">1.10</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="mosel"></span>
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">New</span> <span class="n" style="color: #333;">upstream</span> <span class="n" style="color: #333;">release</span><span class="p">.</span></span>
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<a href="https://salsa.debian.org/med-team/htslib/compare/bc910b7a1257cc17df26465f9d00eb0d3e92bc80...52415fa2e6ac93725e7c2edfe3d307011a3f8ee2#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,12 +13,12 @@ Build-Depends: debhelper (>= 11~),</td>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> libssl-dev,</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> zlib1g-dev,</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> libdeflate-dev</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">3.0</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">4.1</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/htslib</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/htslib.git</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Homepage: https://github.com/samtools/htslib</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext">Package: libhts<span class="idiff left right">2</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">Package: libhts<span class="idiff left right">3</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Multi-Arch: same</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Section: libs</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,7 +42,7 @@ Package: libhts-dev</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext">Multi-Arch: same</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext">Section: libdevel</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext">Depends: libhts<span class="idiff left right">2</span> (= ${binary:Version}),</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">Depends: libhts<span class="idiff left right">3</span> (= ${binary:Version}),</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> liblzma-dev,</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> zlib1g-dev,</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> ${misc:Depends}</span>
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<li id="320e0a1f712271d8a80729a499fdcfd9c66d5fb3">
<a href="https://salsa.debian.org/med-team/htslib/compare/bc910b7a1257cc17df26465f9d00eb0d3e92bc80...52415fa2e6ac93725e7c2edfe3d307011a3f8ee2#320e0a1f712271d8a80729a499fdcfd9c66d5fb3"><strong>debian/libhts2.symbols</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">libhts.so.2 libhts2 #MINVER#</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext"> _reader_next_line@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> _regidx_build_index@Base 1.2.1</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> bam_aux2A@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> bam_aux2Z@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> bam_aux2f@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> bam_aux2i@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> bam_auxB2f@Base 1.4.1</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> bam_auxB2i@Base 1.4.1</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> bam_auxB_len@Base 1.4.1</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> bam_aux_append@Base 1.0</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> bam_aux_del@Base 1.0</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> bam_aux_get@Base 1.0</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> bam_aux_update_array@Base 1.9</span>
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<td class="diff-line-num old old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> bam_aux_update_float@Base 1.9</span>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> bam_aux_update_int@Base 1.9</span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> bam_aux_update_str@Base 1.4.1</span>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> bam_cigar2qlen@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> bam_cigar2rlen@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> bam_cigar2rqlens@Base 1.7</span>
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<td class="diff-line-num old old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> bam_construct_seq@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> bam_copy1@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> bam_destroy1@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> bam_dup1@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> bam_endpos@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> bam_flag2str@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> bam_hdr_destroy@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> bam_hdr_dup@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> bam_hdr_init@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> bam_hdr_read@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> bam_hdr_write@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> bam_header_to_cram@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> bam_index_build@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> bam_init1@Base 1.0</span>
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35
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> bam_mplp_auto@Base 1.0</span>
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36
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> bam_mplp_constructor@Base 1.4.1</span>
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37
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> bam_mplp_destroy@Base 1.0</span>
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38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> bam_mplp_destructor@Base 1.4.1</span>
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39
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> bam_mplp_init@Base 1.0</span>
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40
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> bam_mplp_init_overlaps@Base 1.0</span>
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41
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> bam_mplp_reset@Base 1.4.1</span>
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<td class="diff-line-num old old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
42
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> bam_mplp_set_maxcnt@Base 1.0</span>
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43
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> bam_name2id@Base 1.0</span>
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44
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> bam_plp_auto@Base 1.0</span>
</pre>
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45
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> bam_plp_constructor@Base 1.4.1</span>
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46
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> bam_plp_destroy@Base 1.0</span>
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47
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> bam_plp_destructor@Base 1.4.1</span>
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48
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> bam_plp_init@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
49
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> bam_plp_init_overlaps@Base 1.0</span>
</pre>
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50
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> bam_plp_next@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
51
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> bam_plp_push@Base 1.0</span>
</pre>
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52
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> bam_plp_reset@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
53
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> bam_plp_set_maxcnt@Base 1.0</span>
</pre>
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54
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> bam_read1@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
55
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> bam_str2flag@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
56
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> bam_write1@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
57
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> bcf_add_filter@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
58
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> bcf_add_id@Base 1.3</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
59
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> bcf_calc_ac@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
60
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> bcf_clear@Base 1.0</span>
</pre>
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61
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> bcf_copy@Base 1.2.1</span>
</pre>
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62
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"> bcf_destroy@Base 1.0</span>
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63
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"> bcf_dup@Base 1.0</span>
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64
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> bcf_empty@Base 1.3</span>
</pre>
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65
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> bcf_enc_vchar@Base 1.0</span>
</pre>
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66
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> bcf_enc_vfloat@Base 1.0</span>
</pre>
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67
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> bcf_enc_vint@Base 1.0</span>
</pre>
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68
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> bcf_float_missing@Base 1.0</span>
</pre>
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69
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="plaintext"> bcf_float_vector_end@Base 1.0</span>
</pre>
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70
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> bcf_fmt_array@Base 1.0</span>
</pre>
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71
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> bcf_fmt_sized_array@Base 1.0</span>
</pre>
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72
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> bcf_get_fmt@Base 1.0</span>
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73
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> bcf_get_fmt_id@Base 1.1</span>
</pre>
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74
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> bcf_get_format_string@Base 1.0</span>
</pre>
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75
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="plaintext"> bcf_get_format_values@Base 1.0</span>
</pre>
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76
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext"> bcf_get_info@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
77
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="plaintext"> bcf_get_info_id@Base 1.1</span>
</pre>
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78
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> bcf_get_info_values@Base 1.0</span>
</pre>
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79
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="plaintext"> bcf_get_variant_type@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
80
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> bcf_get_variant_types@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
81
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> bcf_gt_type@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
82
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="plaintext"> bcf_has_filter@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
83
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> bcf_hdr_add_hrec@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
84
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> bcf_hdr_add_sample@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
85
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="plaintext"> bcf_hdr_append@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
86
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> bcf_hdr_check_sanity@Base 1.0</span>
</pre>
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87
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> bcf_hdr_combine@Base 1.0</span>
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88
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> bcf_hdr_destroy@Base 1.0</span>
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89
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> bcf_hdr_dup@Base 1.0</span>
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90
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> bcf_hdr_fmt_text@Base 1.0</span>
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91
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> bcf_hdr_format@Base 1.4.1</span>
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92
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="plaintext"> bcf_hdr_get_hrec@Base 1.0</span>
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93
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="plaintext"> bcf_hdr_get_version@Base 1.0</span>
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94
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="plaintext"> bcf_hdr_id2int@Base 1.0</span>
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95
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="plaintext"> bcf_hdr_init@Base 1.0</span>
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96
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="plaintext"> bcf_hdr_merge@Base 1.3</span>
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97
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="plaintext"> bcf_hdr_parse@Base 1.0</span>
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98
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="plaintext"> bcf_hdr_parse_line@Base 1.0</span>
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99
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> bcf_hdr_parse_sample_line@Base 1.0</span>
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100
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="plaintext"> bcf_hdr_printf@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
101
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="plaintext"> bcf_hdr_read@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
102
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="plaintext"> bcf_hdr_register_hrec@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
103
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="plaintext"> bcf_hdr_remove@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
104
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="plaintext"> bcf_hdr_seqnames@Base 1.0</span>
</pre>
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105
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="plaintext"> bcf_hdr_set@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
106
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="plaintext"> bcf_hdr_set_samples@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
107
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="plaintext"> bcf_hdr_set_version@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
108
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="plaintext"> bcf_hdr_subset@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
109
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="plaintext"> bcf_hdr_sync@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
110
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="plaintext"> bcf_hdr_write@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
111
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="plaintext"> bcf_header_debug@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
112
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"> bcf_hrec_add_key@Base 1.0</span>
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113
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext"> bcf_hrec_debug@Base 1.0</span>
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114
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext"> bcf_hrec_destroy@Base 1.0</span>
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115
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="plaintext"> bcf_hrec_dup@Base 1.0</span>
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116
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext"> bcf_hrec_find_key@Base 1.0</span>
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117
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext"> bcf_hrec_format@Base 1.0</span>
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118
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> bcf_hrec_set_val@Base 1.0</span>
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119
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="plaintext"> bcf_index@Base 1.0</span>
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120
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="plaintext"> bcf_index_build2@Base 1.3</span>
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121
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="plaintext"> bcf_index_build3@Base 1.4.1</span>
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122
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="plaintext"> bcf_index_build@Base 1.0</span>
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123
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="plaintext"> bcf_index_load2@Base 1.3</span>
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124
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="plaintext"> bcf_init@Base 1.0</span>
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125
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext"> bcf_is_snp@Base 1.0</span>
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126
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="plaintext"> bcf_read@Base 1.0</span>
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127
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="plaintext"> bcf_readrec@Base 1.0</span>
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128
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="plaintext"> bcf_remove_allele_set@Base 1.3</span>
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129
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="plaintext"> bcf_remove_alleles@Base 1.0</span>
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130
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="plaintext"> bcf_remove_filter@Base 1.0</span>
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131
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="plaintext"> bcf_sr_add_reader@Base 1.0</span>
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132
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="plaintext"> bcf_sr_destroy@Base 1.0</span>
</pre>
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133
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="plaintext"> bcf_sr_destroy_threads@Base 1.4.1</span>
</pre>
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134
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="plaintext"> bcf_sr_init@Base 1.0</span>
</pre>
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135
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="plaintext"> bcf_sr_next_line@Base 1.0</span>
</pre>
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136
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="plaintext"> bcf_sr_regions_destroy@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
137
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="plaintext"> bcf_sr_regions_flush@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
138
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="plaintext"> bcf_sr_regions_init@Base 1.0</span>
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139
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="plaintext"> bcf_sr_regions_next@Base 1.0</span>
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140
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="plaintext"> bcf_sr_regions_overlap@Base 1.0</span>
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141
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="plaintext"> bcf_sr_regions_seek@Base 1.0</span>
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142
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="plaintext"> bcf_sr_remove_reader@Base 1.0</span>
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143
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="plaintext"> bcf_sr_seek@Base 1.0</span>
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144
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="plaintext"> bcf_sr_set_opt@Base 1.4.1</span>
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145
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="plaintext"> bcf_sr_set_regions@Base 1.0</span>
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146
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="plaintext"> bcf_sr_set_samples@Base 1.0</span>
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147
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="plaintext"> bcf_sr_set_targets@Base 1.0</span>
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148
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="plaintext"> bcf_sr_set_threads@Base 1.4.1</span>
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149
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="plaintext"> bcf_sr_sort_add_active@Base 1.7</span>
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150
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="plaintext"> bcf_sr_sort_destroy@Base 1.4.1</span>
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="plaintext"> bcf_sr_sort_init@Base 1.4.1</span>
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="plaintext"> bcf_sr_sort_next@Base 1.4.1</span>
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="plaintext"> bcf_sr_sort_remove_reader@Base 1.4.1</span>
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154
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="plaintext"> bcf_sr_sort_reset@Base 1.9</span>
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="plaintext"> bcf_sr_sort_set_active@Base 1.7</span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="plaintext"> bcf_sr_strerror@Base 1.2.1</span>
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="plaintext"> bcf_subset@Base 1.0</span>
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158
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="plaintext"> bcf_subset_format@Base 1.0</span>
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159
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="plaintext"> bcf_sweep_bwd@Base 1.0</span>
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160
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="plaintext"> bcf_sweep_destroy@Base 1.0</span>
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161
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="plaintext"> bcf_sweep_fwd@Base 1.0</span>
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162
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="plaintext"> bcf_sweep_hdr@Base 1.0</span>
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163
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="plaintext"> bcf_sweep_init@Base 1.0</span>
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164
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="plaintext"> bcf_translate@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
165
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> bcf_trim_alleles@Base 1.0</span>
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166
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="plaintext"> bcf_type_shift@Base 1.0</span>
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167
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext"> bcf_unpack@Base 1.0</span>
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168
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="plaintext"> bcf_update_alleles@Base 1.0</span>
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169
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="plaintext"> bcf_update_alleles_str@Base 1.0</span>
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170
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="plaintext"> bcf_update_filter@Base 1.0</span>
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171
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="plaintext"> bcf_update_format@Base 1.0</span>
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172
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="plaintext"> bcf_update_format_string@Base 1.0</span>
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173
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="plaintext"> bcf_update_id@Base 1.0</span>
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174
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="plaintext"> bcf_update_info@Base 1.0</span>
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175
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="plaintext"> bcf_write@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
176
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="plaintext"> bgzf_block_write@Base 1.4.1</span>
</pre>
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177
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="plaintext"> bgzf_check_EOF@Base 1.0</span>
</pre>
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178
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="plaintext"> bgzf_close@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
179
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="plaintext"> bgzf_compress@Base 1.3</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
180
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<pre style="margin: 0;">-<span id="LC180" class="line" lang="plaintext"> bgzf_compression@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
181
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="plaintext"> bgzf_decode_func@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
182
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="plaintext"> bgzf_dopen@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
183
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="plaintext"> bgzf_encode_func@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
184
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="plaintext"> bgzf_encode_level0_func@Base 1.9</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
185
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="plaintext"> bgzf_flush@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
186
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="plaintext"> bgzf_flush_try@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
187
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="plaintext"> bgzf_getc@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
188
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="plaintext"> bgzf_getline@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
189
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="plaintext"> bgzf_hfile@Base 1.5</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
190
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="plaintext"> bgzf_hopen@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
191
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="plaintext"> bgzf_index_add_block@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
192
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="plaintext"> bgzf_index_build_init@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
193
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="plaintext"> bgzf_index_destroy@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
194
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="plaintext"> bgzf_index_dump@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
195
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="plaintext"> bgzf_index_dump_hfile@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
196
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="plaintext"> bgzf_index_load@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
197
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="plaintext"> bgzf_index_load_hfile@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
198
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="plaintext"> bgzf_is_bgzf@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
199
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="plaintext"> bgzf_mt@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
200
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="plaintext"> bgzf_mt_read_block@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
201
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC201" class="line" lang="plaintext"> bgzf_nul_func@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
202
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="plaintext"> bgzf_open@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
203
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="plaintext"> bgzf_raw_read@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
204
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="plaintext"> bgzf_raw_write@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
205
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="plaintext"> bgzf_read@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
206
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="plaintext"> bgzf_read_block@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
207
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="plaintext"> bgzf_seek@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
208
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="plaintext"> bgzf_set_cache_size@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
209
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="plaintext"> bgzf_thread_pool@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
210
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="plaintext"> bgzf_useek@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
211
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC211" class="line" lang="plaintext"> bgzf_utell@Base 1.0</span>
</pre>
</td>
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<td class="diff-line-num old old_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
212
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC212" class="line" lang="plaintext"> bgzf_write@Base 1.0</span>
</pre>
</td>
</tr>
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<td class="diff-line-num old old_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
213
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC213" class="line" lang="plaintext"> cram_beta_decode_char@Base 1.0</span>
</pre>
</td>
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<td class="diff-line-num old old_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
214
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC214" class="line" lang="plaintext"> cram_beta_decode_free@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
215
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC215" class="line" lang="plaintext"> cram_beta_decode_init@Base 1.0</span>
</pre>
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</tr>
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<td class="diff-line-num old old_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
216
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="plaintext"> cram_beta_decode_int@Base 1.0</span>
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217
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<pre style="margin: 0;">-<span id="LC217" class="line" lang="plaintext"> cram_beta_encode_char@Base 1.0</span>
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218
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="plaintext"> cram_beta_encode_free@Base 1.0</span>
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219
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="plaintext"> cram_beta_encode_init@Base 1.0</span>
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220
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="plaintext"> cram_beta_encode_int@Base 1.0</span>
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221
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="plaintext"> cram_beta_encode_store@Base 1.0</span>
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222
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<pre style="margin: 0;">-<span id="LC222" class="line" lang="plaintext"> cram_block_append@Base 1.3</span>
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223
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<pre style="margin: 0;">-<span id="LC223" class="line" lang="plaintext"> cram_block_compression_hdr_decoder2encoder@Base 1.3</span>
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224
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="plaintext"> cram_block_compression_hdr_set_rg@Base 1.3</span>
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225
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="plaintext"> cram_block_get_comp_size@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="plaintext"> cram_block_get_content_id@Base 1.3</span>
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227
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="plaintext"> cram_block_get_content_type@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="plaintext"> cram_block_get_crc32@Base 1.3</span>
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229
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="plaintext"> cram_block_get_data@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="plaintext"> cram_block_get_offset@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC231" class="line" lang="plaintext"> cram_block_get_size@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="plaintext"> cram_block_get_uncomp_size@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="plaintext"> cram_block_method2str@Base 1.0</span>
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234
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<pre style="margin: 0;">-<span id="LC234" class="line" lang="plaintext"> cram_block_set_comp_size@Base 1.3</span>
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235
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<pre style="margin: 0;">-<span id="LC235" class="line" lang="plaintext"> cram_block_set_content_id@Base 1.3</span>
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236
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="plaintext"> cram_block_set_crc32@Base 1.3</span>
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237
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="plaintext"> cram_block_set_data@Base 1.3</span>
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238
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<pre style="margin: 0;">-<span id="LC238" class="line" lang="plaintext"> cram_block_set_offset@Base 1.3</span>
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239
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<pre style="margin: 0;">-<span id="LC239" class="line" lang="plaintext"> cram_block_set_size@Base 1.3</span>
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240
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="plaintext"> cram_block_set_uncomp_size@Base 1.3</span>
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241
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="plaintext"> cram_block_size@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="plaintext"> cram_block_update_size@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC243" class="line" lang="plaintext"> cram_byte_array_len_decode@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC244" class="line" lang="plaintext"> cram_byte_array_len_decode_free@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC245" class="line" lang="plaintext"> cram_byte_array_len_decode_init@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC246" class="line" lang="plaintext"> cram_byte_array_len_encode@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC247" class="line" lang="plaintext"> cram_byte_array_len_encode_free@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC248" class="line" lang="plaintext"> cram_byte_array_len_encode_init@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC249" class="line" lang="plaintext"> cram_byte_array_len_encode_store@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC250" class="line" lang="plaintext"> cram_byte_array_stop_decode_block@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC251" class="line" lang="plaintext"> cram_byte_array_stop_decode_free@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC252" class="line" lang="plaintext"> cram_byte_array_stop_decode_init@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC253" class="line" lang="plaintext"> cram_byte_array_stop_encode@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC254" class="line" lang="plaintext"> cram_byte_array_stop_encode_free@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC255" class="line" lang="plaintext"> cram_byte_array_stop_encode_init@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC256" class="line" lang="plaintext"> cram_byte_array_stop_encode_store@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC257" class="line" lang="plaintext"> cram_check_EOF@Base 1.4.1</span>
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<pre style="margin: 0;">-<span id="LC258" class="line" lang="plaintext"> cram_close@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC259" class="line" lang="plaintext"> cram_codec_decoder2encoder@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC260" class="line" lang="plaintext"> cram_codec_to_id@Base 1.2.1</span>
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<pre style="margin: 0;">-<span id="LC261" class="line" lang="plaintext"> cram_compress_block@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC262" class="line" lang="plaintext"> cram_container_get_landmarks@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC263" class="line" lang="plaintext"> cram_container_get_length@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC264" class="line" lang="plaintext"> cram_container_get_num_blocks@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC265" class="line" lang="plaintext"> cram_container_is_empty@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC266" class="line" lang="plaintext"> cram_container_set_landmarks@Base 1.3</span>
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267
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<pre style="margin: 0;">-<span id="LC267" class="line" lang="plaintext"> cram_container_set_length@Base 1.3</span>
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268
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="plaintext"> cram_container_set_num_blocks@Base 1.3</span>
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269
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<pre style="margin: 0;">-<span id="LC269" class="line" lang="plaintext"> cram_container_size@Base 1.3</span>
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270
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="plaintext"> cram_content_type2str@Base 1.0</span>
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271
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="plaintext"> cram_copy_slice@Base 1.3</span>
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<td class="diff-line-num old old_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
272
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="plaintext"> cram_decode_TD@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
273
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="plaintext"> cram_decode_compression_header@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
274
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="plaintext"> cram_decode_estimate_sizes@Base 1.3</span>
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<td class="diff-line-num old old_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
275
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="plaintext"> cram_decode_slice@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
276
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="plaintext"> cram_decode_slice_header@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
277
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="plaintext"> cram_decode_slice_mt@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
278
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<pre style="margin: 0;">-<span id="LC278" class="line" lang="plaintext"> cram_decode_slice_thread@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
279
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="plaintext"> cram_decoder_init@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
280
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="plaintext"> cram_dependent_data_series@Base 1.2.1</span>
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<td class="diff-line-num old old_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
281
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<pre style="margin: 0;">-<span id="LC281" class="line" lang="plaintext"> cram_dopen@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
282
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="plaintext"> cram_drain_rqueue@Base 1.8</span>
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<td class="diff-line-num old old_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
283
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="plaintext"> cram_encode_compression_header@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
284
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="plaintext"> cram_encode_container@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
285
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="plaintext"> cram_encode_slice_header@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
286
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="plaintext"> cram_encoder_init@Base 1.0</span>
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287
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="plaintext"> cram_encoding2str@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
288
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="plaintext"> cram_eof@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
289
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="plaintext"> cram_external_decode_char@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
290
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="plaintext"> cram_external_decode_free@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
291
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="plaintext"> cram_external_decode_init@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
292
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="plaintext"> cram_external_decode_int@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
293
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="plaintext"> cram_external_encode_char@Base 1.2.1</span>
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294
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="plaintext"> cram_external_encode_free@Base 1.0</span>
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295
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="plaintext"> cram_external_encode_init@Base 1.0</span>
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296
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="plaintext"> cram_external_encode_int@Base 1.2.1</span>
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297
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="plaintext"> cram_external_encode_store@Base 1.0</span>
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298
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="plaintext"> cram_fd_get_fp@Base 1.3</span>
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299
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="plaintext"> cram_fd_get_header@Base 1.3</span>
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300
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="plaintext"> cram_fd_get_version@Base 1.3</span>
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301
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="plaintext"> cram_fd_set_fp@Base 1.3</span>
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302
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="plaintext"> cram_fd_set_header@Base 1.3</span>
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303
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="plaintext"> cram_fd_set_version@Base 1.3</span>
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304
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="plaintext"> cram_flush@Base 1.0</span>
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305
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="plaintext"> cram_flush_container@Base 1.0</span>
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306
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="plaintext"> cram_flush_container_mt@Base 1.0</span>
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307
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="plaintext"> cram_flush_thread@Base 1.0</span>
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308
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="plaintext"> cram_free_block@Base 1.0</span>
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309
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="plaintext"> cram_free_compression_header@Base 1.0</span>
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310
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="plaintext"> cram_free_container@Base 1.0</span>
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311
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<pre style="margin: 0;">-<span id="LC311" class="line" lang="plaintext"> cram_free_file_def@Base 1.0</span>
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312
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<pre style="margin: 0;">-<span id="LC312" class="line" lang="plaintext"> cram_free_slice@Base 1.0</span>
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313
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="plaintext"> cram_free_slice_header@Base 1.0</span>
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314
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<pre style="margin: 0;">-<span id="LC314" class="line" lang="plaintext"> cram_gamma_decode@Base 1.0</span>
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315
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<pre style="margin: 0;">-<span id="LC315" class="line" lang="plaintext"> cram_gamma_decode_free@Base 1.0</span>
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316
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<pre style="margin: 0;">-<span id="LC316" class="line" lang="plaintext"> cram_gamma_decode_init@Base 1.0</span>
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317
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<pre style="margin: 0;">-<span id="LC317" class="line" lang="plaintext"> cram_get_bam_seq@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
318
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<pre style="margin: 0;">-<span id="LC318" class="line" lang="plaintext"> cram_get_ref@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
319
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<pre style="margin: 0;">-<span id="LC319" class="line" lang="plaintext"> cram_get_refs@Base 1.4.1</span>
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320
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<pre style="margin: 0;">-<span id="LC320" class="line" lang="plaintext"> cram_get_seq@Base 1.0</span>
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321
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<pre style="margin: 0;">-<span id="LC321" class="line" lang="plaintext"> cram_header_to_bam@Base 1.0</span>
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322
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<pre style="margin: 0;">-<span id="LC322" class="line" lang="plaintext"> cram_huffman_decode_char0@Base 1.0</span>
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323
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<pre style="margin: 0;">-<span id="LC323" class="line" lang="plaintext"> cram_huffman_decode_char@Base 1.0</span>
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324
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<pre style="margin: 0;">-<span id="LC324" class="line" lang="plaintext"> cram_huffman_decode_free@Base 1.0</span>
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325
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<pre style="margin: 0;">-<span id="LC325" class="line" lang="plaintext"> cram_huffman_decode_init@Base 1.0</span>
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326
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<pre style="margin: 0;">-<span id="LC326" class="line" lang="plaintext"> cram_huffman_decode_int0@Base 1.0</span>
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327
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<pre style="margin: 0;">-<span id="LC327" class="line" lang="plaintext"> cram_huffman_decode_int@Base 1.0</span>
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328
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<pre style="margin: 0;">-<span id="LC328" class="line" lang="plaintext"> cram_huffman_decode_null@Base 1.3</span>
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329
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<pre style="margin: 0;">-<span id="LC329" class="line" lang="plaintext"> cram_huffman_encode_char0@Base 1.0</span>
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330
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<pre style="margin: 0;">-<span id="LC330" class="line" lang="plaintext"> cram_huffman_encode_char@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC331" class="line" lang="plaintext"> cram_huffman_encode_free@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC332" class="line" lang="plaintext"> cram_huffman_encode_init@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC333" class="line" lang="plaintext"> cram_huffman_encode_int0@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC334" class="line" lang="plaintext"> cram_huffman_encode_int@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC335" class="line" lang="plaintext"> cram_huffman_encode_store@Base 1.0</span>
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336
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<pre style="margin: 0;">-<span id="LC336" class="line" lang="plaintext"> cram_index_build@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC337" class="line" lang="plaintext"> cram_index_free@Base 1.0</span>
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338
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<pre style="margin: 0;">-<span id="LC338" class="line" lang="plaintext"> cram_index_last@Base 1.7</span>
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<pre style="margin: 0;">-<span id="LC339" class="line" lang="plaintext"> cram_index_load@Base 1.0</span>
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340
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<pre style="margin: 0;">-<span id="LC340" class="line" lang="plaintext"> cram_index_query@Base 1.0</span>
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341
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<pre style="margin: 0;">-<span id="LC341" class="line" lang="plaintext"> cram_load_reference@Base 1.0</span>
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342
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<pre style="margin: 0;">-<span id="LC342" class="line" lang="plaintext"> cram_major_vers@Base 1.3</span>
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343
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<pre style="margin: 0;">-<span id="LC343" class="line" lang="plaintext"> cram_minor_vers@Base 1.3</span>
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344
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<pre style="margin: 0;">-<span id="LC344" class="line" lang="plaintext"> cram_new_block@Base 1.0</span>
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345
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<pre style="margin: 0;">-<span id="LC345" class="line" lang="plaintext"> cram_new_compression_header@Base 1.0</span>
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346
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<pre style="margin: 0;">-<span id="LC346" class="line" lang="plaintext"> cram_new_container@Base 1.0</span>
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347
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<pre style="margin: 0;">-<span id="LC347" class="line" lang="plaintext"> cram_new_metrics@Base 1.0</span>
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348
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<pre style="margin: 0;">-<span id="LC348" class="line" lang="plaintext"> cram_new_slice@Base 1.0</span>
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349
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<pre style="margin: 0;">-<span id="LC349" class="line" lang="plaintext"> cram_open@Base 1.0</span>
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350
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<pre style="margin: 0;">-<span id="LC350" class="line" lang="plaintext"> cram_put_bam_seq@Base 1.0</span>
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351
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<pre style="margin: 0;">-<span id="LC351" class="line" lang="plaintext"> cram_read_SAM_hdr@Base 1.0</span>
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352
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<pre style="margin: 0;">-<span id="LC352" class="line" lang="plaintext"> cram_read_block@Base 1.0</span>
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353
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<pre style="margin: 0;">-<span id="LC353" class="line" lang="plaintext"> cram_read_container@Base 1.0</span>
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354
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<pre style="margin: 0;">-<span id="LC354" class="line" lang="plaintext"> cram_read_file_def@Base 1.0</span>
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355
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<pre style="margin: 0;">-<span id="LC355" class="line" lang="plaintext"> cram_read_slice@Base 1.0</span>
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356
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<pre style="margin: 0;">-<span id="LC356" class="line" lang="plaintext"> cram_ref_decr@Base 1.0</span>
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357
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<pre style="margin: 0;">-<span id="LC357" class="line" lang="plaintext"> cram_ref_incr@Base 1.0</span>
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358
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<pre style="margin: 0;">-<span id="LC358" class="line" lang="plaintext"> cram_ref_load@Base 1.0</span>
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359
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<pre style="margin: 0;">-<span id="LC359" class="line" lang="plaintext"> cram_seek@Base 1.0</span>
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360
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<pre style="margin: 0;">-<span id="LC360" class="line" lang="plaintext"> cram_seek_to_refpos@Base 1.0</span>
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361
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<pre style="margin: 0;">-<span id="LC361" class="line" lang="plaintext"> cram_set_header@Base 1.0</span>
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362
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<pre style="margin: 0;">-<span id="LC362" class="line" lang="plaintext"> cram_set_option@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC363" class="line" lang="plaintext"> cram_set_voption@Base 1.0</span>
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364
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<pre style="margin: 0;">-<span id="LC364" class="line" lang="plaintext"> cram_slice_hdr_get_num_blocks@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC365" class="line" lang="plaintext"> cram_stats_add@Base 1.0</span>
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366
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<pre style="margin: 0;">-<span id="LC366" class="line" lang="plaintext"> cram_stats_create@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC367" class="line" lang="plaintext"> cram_stats_del@Base 1.0</span>
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368
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<pre style="margin: 0;">-<span id="LC368" class="line" lang="plaintext"> cram_stats_encoding@Base 1.0</span>
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369
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<pre style="margin: 0;">-<span id="LC369" class="line" lang="plaintext"> cram_stats_free@Base 1.0</span>
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370
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<pre style="margin: 0;">-<span id="LC370" class="line" lang="plaintext"> cram_store_container@Base 1.3</span>
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371
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<pre style="margin: 0;">-<span id="LC371" class="line" lang="plaintext"> cram_subexp_decode@Base 1.0</span>
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372
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<pre style="margin: 0;">-<span id="LC372" class="line" lang="plaintext"> cram_subexp_decode_free@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="373" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
373
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<pre style="margin: 0;">-<span id="LC373" class="line" lang="plaintext"> cram_subexp_decode_init@Base 1.0</span>
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374
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<pre style="margin: 0;">-<span id="LC374" class="line" lang="plaintext">#MISSING: 1.9# cram_to_bam@Base 1.4.1</span>
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<td class="diff-line-num old old_line" data-linenumber="375" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
375
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<pre style="margin: 0;">-<span id="LC375" class="line" lang="plaintext"> cram_transcode_rg@Base 1.3</span>
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<td class="diff-line-num old old_line" data-linenumber="376" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
376
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<pre style="margin: 0;">-<span id="LC376" class="line" lang="plaintext"> cram_uncompress_block@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="377" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
377
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<pre style="margin: 0;">-<span id="LC377" class="line" lang="plaintext"> cram_update_curr_slice@Base 1.4.1</span>
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<td class="diff-line-num old old_line" data-linenumber="378" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
378
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<pre style="margin: 0;">-<span id="LC378" class="line" lang="plaintext"> cram_write_SAM_hdr@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="379" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
379
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<pre style="margin: 0;">-<span id="LC379" class="line" lang="plaintext"> cram_write_block@Base 1.0</span>
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380
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<pre style="margin: 0;">-<span id="LC380" class="line" lang="plaintext"> cram_write_container@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="381" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
381
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<pre style="margin: 0;">-<span id="LC381" class="line" lang="plaintext"> cram_write_file_def@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="382" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
382
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<pre style="margin: 0;">-<span id="LC382" class="line" lang="plaintext"> debug_buffer@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="383" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
383
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<pre style="margin: 0;">-<span id="LC383" class="line" lang="plaintext"> debug_buffers@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
384
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<pre style="margin: 0;">-<span id="LC384" class="line" lang="plaintext"> errmod_cal@Base 1.4.1</span>
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<td class="diff-line-num old old_line" data-linenumber="385" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
385
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<pre style="margin: 0;">-<span id="LC385" class="line" lang="plaintext"> errmod_destroy@Base 1.4.1</span>
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<td class="diff-line-num old old_line" data-linenumber="386" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
386
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<pre style="margin: 0;">-<span id="LC386" class="line" lang="plaintext"> errmod_init@Base 1.4.1</span>
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<td class="diff-line-num old old_line" data-linenumber="387" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
387
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<pre style="margin: 0;">-<span id="LC387" class="line" lang="plaintext"> expand_cache_path@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="388" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
388
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<pre style="margin: 0;">-<span id="LC388" class="line" lang="plaintext"> fai_build3@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
389
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<pre style="margin: 0;">-<span id="LC389" class="line" lang="plaintext"> fai_build@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="390" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
390
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<pre style="margin: 0;">-<span id="LC390" class="line" lang="plaintext">#MISSING: 1.9# fai_build_core@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="391" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
391
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<pre style="margin: 0;">-<span id="LC391" class="line" lang="plaintext"> fai_destroy@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
392
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<pre style="margin: 0;">-<span id="LC392" class="line" lang="plaintext"> fai_fetch@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
393
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<pre style="margin: 0;">-<span id="LC393" class="line" lang="plaintext"> fai_fetchqual@Base 1.9</span>
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<td class="diff-line-num old old_line" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
394
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<pre style="margin: 0;">-<span id="LC394" class="line" lang="plaintext"> fai_load3@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
395
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<pre style="margin: 0;">-<span id="LC395" class="line" lang="plaintext"> fai_load3_format@Base 1.9</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
396
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<pre style="margin: 0;">-<span id="LC396" class="line" lang="plaintext"> fai_load@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="397" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
397
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<pre style="margin: 0;">-<span id="LC397" class="line" lang="plaintext"> fai_load_format@Base 1.9</span>
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<td class="diff-line-num old old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
398
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<pre style="margin: 0;">-<span id="LC398" class="line" lang="plaintext"> faidx_fetch_nseq@Base 1.2.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="399" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
399
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<pre style="margin: 0;">-<span id="LC399" class="line" lang="plaintext"> faidx_fetch_qual@Base 1.9</span>
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<td class="diff-line-num old old_line" data-linenumber="400" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
400
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<pre style="margin: 0;">-<span id="LC400" class="line" lang="plaintext"> faidx_fetch_seq@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="401" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
401
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<pre style="margin: 0;">-<span id="LC401" class="line" lang="plaintext"> faidx_has_seq@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="402" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
402
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<pre style="margin: 0;">-<span id="LC402" class="line" lang="plaintext"> faidx_iseq@Base 1.1</span>
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<td class="diff-line-num old old_line" data-linenumber="403" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
403
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<pre style="margin: 0;">-<span id="LC403" class="line" lang="plaintext"> faidx_nseq@Base 1.1</span>
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<td class="diff-line-num old old_line" data-linenumber="404" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
404
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<pre style="margin: 0;">-<span id="LC404" class="line" lang="plaintext"> faidx_seq_len@Base 1.1</span>
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405
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<pre style="margin: 0;">-<span id="LC405" class="line" lang="plaintext"> file_exists@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="406" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
406
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<pre style="margin: 0;">-<span id="LC406" class="line" lang="plaintext"> file_size@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
407
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<pre style="margin: 0;">-<span id="LC407" class="line" lang="plaintext"> find_file_url@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
408
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<pre style="margin: 0;">-<span id="LC408" class="line" lang="plaintext"> find_path@Base 1.3</span>
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<td class="diff-line-num old old_line" data-linenumber="409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
409
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<pre style="margin: 0;">-<span id="LC409" class="line" lang="plaintext"> grp_create_key@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="410" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
410
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<pre style="margin: 0;">-<span id="LC410" class="line" lang="plaintext"> hclose@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
411
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<pre style="margin: 0;">-<span id="LC411" class="line" lang="plaintext"> hclose_abruptly@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
412
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<pre style="margin: 0;">-<span id="LC412" class="line" lang="plaintext"> hdopen@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
413
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<pre style="margin: 0;">-<span id="LC413" class="line" lang="plaintext"> hfile_add_scheme_handler@Base 1.3</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
414
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<pre style="margin: 0;">-<span id="LC414" class="line" lang="plaintext"> hfile_always_local@Base 1.3</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
415
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<pre style="margin: 0;">-<span id="LC415" class="line" lang="plaintext"> hfile_always_remote@Base 1.3</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="416" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
416
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<pre style="margin: 0;">-<span id="LC416" class="line" lang="plaintext"> hfile_destroy@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
417
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<pre style="margin: 0;">-<span id="LC417" class="line" lang="plaintext"> hfile_init@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
418
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<pre style="margin: 0;">-<span id="LC418" class="line" lang="plaintext"> hfile_init_fixed@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="419" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
419
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<pre style="margin: 0;">-<span id="LC419" class="line" lang="plaintext"> hfile_mem_get_buffer@Base 1.7</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
420
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<pre style="margin: 0;">-<span id="LC420" class="line" lang="plaintext"> hfile_mem_steal_buffer@Base 1.7</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="421" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
421
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<pre style="margin: 0;">-<span id="LC421" class="line" lang="plaintext"> hfile_oflags@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="422" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
422
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC422" class="line" lang="plaintext"> hfile_plugin_init_gcs@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="423" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
423
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<pre style="margin: 0;">-<span id="LC423" class="line" lang="plaintext"> hfile_plugin_init_libcurl@Base 1.3.1</span>
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424
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<pre style="margin: 0;">-<span id="LC424" class="line" lang="plaintext"> hfile_plugin_init_mem@Base 1.7</span>
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425
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<pre style="margin: 0;">-<span id="LC425" class="line" lang="plaintext"> hfile_plugin_init_net@Base 1.3</span>
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426
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<pre style="margin: 0;">-<span id="LC426" class="line" lang="plaintext"> hfile_plugin_init_s3@Base 1.4.1</span>
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427
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<pre style="margin: 0;">-<span id="LC427" class="line" lang="plaintext"> hfile_set_blksize@Base 1.5</span>
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<td class="diff-line-num old old_line" data-linenumber="428" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
428
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<pre style="margin: 0;">-<span id="LC428" class="line" lang="plaintext"> hflush@Base 1.0</span>
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429
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<pre style="margin: 0;">-<span id="LC429" class="line" lang="plaintext"> hgetc2@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
430
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<pre style="margin: 0;">-<span id="LC430" class="line" lang="plaintext"> hgetdelim@Base 1.4.1</span>
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431
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<pre style="margin: 0;">-<span id="LC431" class="line" lang="plaintext"> hgets@Base 1.4.1</span>
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432
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<pre style="margin: 0;">-<span id="LC432" class="line" lang="plaintext"> hisremote@Base 1.2.1</span>
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433
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<pre style="margin: 0;">-<span id="LC433" class="line" lang="plaintext"> hopen@Base 1.0</span>
</pre>
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434
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<pre style="margin: 0;">-<span id="LC434" class="line" lang="plaintext"> hopen_htsget_redirect@Base 1.6</span>
</pre>
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435
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<pre style="margin: 0;">-<span id="LC435" class="line" lang="plaintext"> hopen_net@Base 1.0</span>
</pre>
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436
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<pre style="margin: 0;">-<span id="LC436" class="line" lang="plaintext"> hopenv_mem@Base 1.7</span>
</pre>
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437
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<pre style="margin: 0;">-<span id="LC437" class="line" lang="plaintext"> hpeek@Base 1.0</span>
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438
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<pre style="margin: 0;">-<span id="LC438" class="line" lang="plaintext"> hputc2@Base 1.0</span>
</pre>
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439
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<pre style="margin: 0;">-<span id="LC439" class="line" lang="plaintext"> hputs2@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
440
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<pre style="margin: 0;">-<span id="LC440" class="line" lang="plaintext"> hread2@Base 1.0</span>
</pre>
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441
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<pre style="margin: 0;">-<span id="LC441" class="line" lang="plaintext"> hrec_add_idx@Base 1.0</span>
</pre>
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442
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<pre style="margin: 0;">-<span id="LC442" class="line" lang="plaintext"> hseek@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="443" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
443
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<pre style="margin: 0;">-<span id="LC443" class="line" lang="plaintext"> hts_base64_decoded_length@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="444" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
444
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<pre style="margin: 0;">-<span id="LC444" class="line" lang="plaintext"> hts_check_EOF@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="445" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
445
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<pre style="margin: 0;">-<span id="LC445" class="line" lang="plaintext"> hts_close@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="446" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
446
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<pre style="margin: 0;">-<span id="LC446" class="line" lang="plaintext"> hts_decode_base64@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="447" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
447
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<pre style="margin: 0;">-<span id="LC447" class="line" lang="plaintext"> hts_decode_percent@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
448
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<pre style="margin: 0;">-<span id="LC448" class="line" lang="plaintext"> hts_detect_format@Base 1.2.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="449" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
449
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<pre style="margin: 0;">-<span id="LC449" class="line" lang="plaintext"> hts_drand48@Base 1.6</span>
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450
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<pre style="margin: 0;">-<span id="LC450" class="line" lang="plaintext"> hts_erand48@Base 1.6</span>
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451
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<pre style="margin: 0;">-<span id="LC451" class="line" lang="plaintext"> hts_file_type@Base 1.0</span>
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452
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<pre style="margin: 0;">-<span id="LC452" class="line" lang="plaintext"> hts_format_description@Base 1.2.1</span>
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453
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<pre style="margin: 0;">-<span id="LC453" class="line" lang="plaintext"> hts_format_file_extension@Base 1.3</span>
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454
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<pre style="margin: 0;">-<span id="LC454" class="line" lang="plaintext"> hts_get_bgzfp@Base 1.0</span>
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455
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<pre style="margin: 0;">-<span id="LC455" class="line" lang="plaintext"> hts_get_format@Base 1.2.1</span>
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456
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<pre style="margin: 0;">-<span id="LC456" class="line" lang="plaintext"> hts_get_log_level@Base 1.5</span>
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457
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<pre style="margin: 0;">-<span id="LC457" class="line" lang="plaintext"> hts_getline@Base 1.0</span>
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458
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<pre style="margin: 0;">-<span id="LC458" class="line" lang="plaintext"> hts_hopen@Base 1.2.1</span>
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459
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<pre style="margin: 0;">-<span id="LC459" class="line" lang="plaintext"> hts_idx_destroy@Base 1.0</span>
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460
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<pre style="margin: 0;">-<span id="LC460" class="line" lang="plaintext"> hts_idx_finish@Base 1.0</span>
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461
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<pre style="margin: 0;">-<span id="LC461" class="line" lang="plaintext"> hts_idx_get_meta@Base 1.0</span>
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462
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<pre style="margin: 0;">-<span id="LC462" class="line" lang="plaintext"> hts_idx_get_n_no_coor@Base 1.0</span>
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463
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<pre style="margin: 0;">-<span id="LC463" class="line" lang="plaintext"> hts_idx_get_stat@Base 1.0</span>
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464
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<pre style="margin: 0;">-<span id="LC464" class="line" lang="plaintext"> hts_idx_getfn@Base 1.0</span>
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465
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<pre style="margin: 0;">-<span id="LC465" class="line" lang="plaintext"> hts_idx_init@Base 1.0</span>
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466
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<pre style="margin: 0;">-<span id="LC466" class="line" lang="plaintext"> hts_idx_load2@Base 1.3</span>
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467
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<pre style="margin: 0;">-<span id="LC467" class="line" lang="plaintext"> hts_idx_load@Base 1.0</span>
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468
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<pre style="margin: 0;">-<span id="LC468" class="line" lang="plaintext"> hts_idx_push@Base 1.0</span>
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469
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<pre style="margin: 0;">-<span id="LC469" class="line" lang="plaintext"> hts_idx_save@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC470" class="line" lang="plaintext"> hts_idx_save_as@Base 1.3</span>
</pre>
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471
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<pre style="margin: 0;">-<span id="LC471" class="line" lang="plaintext"> hts_idx_seqnames@Base 1.0</span>
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472
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<pre style="margin: 0;">-<span id="LC472" class="line" lang="plaintext"> hts_idx_set_meta@Base 1.0</span>
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473
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<pre style="margin: 0;">-<span id="LC473" class="line" lang="plaintext"> hts_itr_destroy@Base 1.0</span>
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474
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<pre style="margin: 0;">-<span id="LC474" class="line" lang="plaintext"> hts_itr_multi_bam@Base 1.7</span>
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475
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<pre style="margin: 0;">-<span id="LC475" class="line" lang="plaintext"> hts_itr_multi_cram@Base 1.7</span>
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476
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<pre style="margin: 0;">-<span id="LC476" class="line" lang="plaintext"> hts_itr_multi_destroy@Base 1.7</span>
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477
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<pre style="margin: 0;">-<span id="LC477" class="line" lang="plaintext"> hts_itr_multi_next@Base 1.7</span>
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478
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<pre style="margin: 0;">-<span id="LC478" class="line" lang="plaintext"> hts_itr_next@Base 1.0</span>
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479
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<pre style="margin: 0;">-<span id="LC479" class="line" lang="plaintext"> hts_itr_off@Base 1.7</span>
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480
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<pre style="margin: 0;">-<span id="LC480" class="line" lang="plaintext"> hts_itr_query@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="481" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
481
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<pre style="margin: 0;">-<span id="LC481" class="line" lang="plaintext"> hts_itr_querys@Base 1.0</span>
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482
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<pre style="margin: 0;">-<span id="LC482" class="line" lang="plaintext"> hts_itr_regions@Base 1.7</span>
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483
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<pre style="margin: 0;">-<span id="LC483" class="line" lang="plaintext"> hts_json_alloc_token@Base 1.7</span>
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484
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<pre style="margin: 0;">-<span id="LC484" class="line" lang="plaintext"> hts_json_fnext@Base 1.4.1</span>
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485
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<pre style="margin: 0;">-<span id="LC485" class="line" lang="plaintext"> hts_json_free_token@Base 1.7</span>
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486
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<pre style="margin: 0;">-<span id="LC486" class="line" lang="plaintext"> hts_json_fskip_value@Base 1.4.1</span>
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487
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<pre style="margin: 0;">-<span id="LC487" class="line" lang="plaintext"> hts_json_snext@Base 1.4.1</span>
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488
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<pre style="margin: 0;">-<span id="LC488" class="line" lang="plaintext"> hts_json_sskip_value@Base 1.4.1</span>
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489
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<pre style="margin: 0;">-<span id="LC489" class="line" lang="plaintext"> hts_json_token_str@Base 1.7</span>
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490
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<pre style="margin: 0;">-<span id="LC490" class="line" lang="plaintext"> hts_json_token_type@Base 1.7</span>
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491
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<pre style="margin: 0;">-<span id="LC491" class="line" lang="plaintext"> hts_log@Base 1.5</span>
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492
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<pre style="margin: 0;">-<span id="LC492" class="line" lang="plaintext"> hts_lrand48@Base 1.6</span>
</pre>
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493
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<pre style="margin: 0;">-<span id="LC493" class="line" lang="plaintext"> hts_md5_destroy@Base 1.3</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="494" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
494
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<pre style="margin: 0;">-<span id="LC494" class="line" lang="plaintext"> hts_md5_final@Base 1.3</span>
</pre>
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495
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<pre style="margin: 0;">-<span id="LC495" class="line" lang="plaintext"> hts_md5_hex@Base 1.3</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="496" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
496
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<pre style="margin: 0;">-<span id="LC496" class="line" lang="plaintext"> hts_md5_init@Base 1.3</span>
</pre>
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497
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<pre style="margin: 0;">-<span id="LC497" class="line" lang="plaintext"> hts_md5_reset@Base 1.3</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="498" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
498
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<pre style="margin: 0;">-<span id="LC498" class="line" lang="plaintext"> hts_md5_update@Base 1.3</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="499" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
499
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<pre style="margin: 0;">-<span id="LC499" class="line" lang="plaintext"> hts_open@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="500" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
500
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<pre style="margin: 0;">-<span id="LC500" class="line" lang="plaintext"> hts_open_format@Base 1.3</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="501" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
501
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<pre style="margin: 0;">-<span id="LC501" class="line" lang="plaintext"> hts_opt_add@Base 1.3</span>
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502
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<pre style="margin: 0;">-<span id="LC502" class="line" lang="plaintext"> hts_opt_apply@Base 1.3</span>
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503
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<pre style="margin: 0;">-<span id="LC503" class="line" lang="plaintext"> hts_opt_free@Base 1.3</span>
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504
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<pre style="margin: 0;">-<span id="LC504" class="line" lang="plaintext"> hts_parse_decimal@Base 1.3</span>
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505
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<pre style="margin: 0;">-<span id="LC505" class="line" lang="plaintext"> hts_parse_format@Base 1.3</span>
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506
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<pre style="margin: 0;">-<span id="LC506" class="line" lang="plaintext"> hts_parse_opt_list@Base 1.3</span>
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<td class="diff-line-num old old_line" data-linenumber="507" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
507
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<pre style="margin: 0;">-<span id="LC507" class="line" lang="plaintext"> hts_parse_reg@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="508" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
508
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<pre style="margin: 0;">-<span id="LC508" class="line" lang="plaintext"> hts_readlines@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
509
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<pre style="margin: 0;">-<span id="LC509" class="line" lang="plaintext"> hts_readlist@Base 1.0</span>
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510
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<pre style="margin: 0;">-<span id="LC510" class="line" lang="plaintext"> hts_realloc_or_die@Base 1.4.1</span>
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511
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<pre style="margin: 0;">-<span id="LC511" class="line" lang="plaintext"> hts_reglist_free@Base 1.7</span>
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<td class="diff-line-num old old_line" data-linenumber="512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
512
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<pre style="margin: 0;">-<span id="LC512" class="line" lang="plaintext"> hts_set_cache_size@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
513
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<pre style="margin: 0;">-<span id="LC513" class="line" lang="plaintext"> hts_set_fai_filename@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
514
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<pre style="margin: 0;">-<span id="LC514" class="line" lang="plaintext"> hts_set_log_level@Base 1.5</span>
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<td class="diff-line-num old old_line" data-linenumber="515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
515
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<pre style="margin: 0;">-<span id="LC515" class="line" lang="plaintext"> hts_set_opt@Base 1.2.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
516
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<pre style="margin: 0;">-<span id="LC516" class="line" lang="plaintext"> hts_set_thread_pool@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="517" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
517
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<pre style="margin: 0;">-<span id="LC517" class="line" lang="plaintext"> hts_set_threads@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="518" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
518
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<pre style="margin: 0;">-<span id="LC518" class="line" lang="plaintext"> hts_srand48@Base 1.6</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="519" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
519
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<pre style="margin: 0;">-<span id="LC519" class="line" lang="plaintext"> hts_tpool_delete_result@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="520" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
520
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<pre style="margin: 0;">-<span id="LC520" class="line" lang="plaintext"> hts_tpool_destroy@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
521
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<pre style="margin: 0;">-<span id="LC521" class="line" lang="plaintext"> hts_tpool_dispatch2@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
522
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<pre style="margin: 0;">-<span id="LC522" class="line" lang="plaintext"> hts_tpool_dispatch@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
523
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<pre style="margin: 0;">-<span id="LC523" class="line" lang="plaintext"> hts_tpool_init@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
524
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<pre style="margin: 0;">-<span id="LC524" class="line" lang="plaintext"> hts_tpool_kill@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="525" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
525
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<pre style="margin: 0;">-<span id="LC525" class="line" lang="plaintext"> hts_tpool_next_result@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="526" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
526
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<pre style="margin: 0;">-<span id="LC526" class="line" lang="plaintext"> hts_tpool_next_result_wait@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="527" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
527
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<pre style="margin: 0;">-<span id="LC527" class="line" lang="plaintext"> hts_tpool_process_attach@Base 1.4.1</span>
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528
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<pre style="margin: 0;">-<span id="LC528" class="line" lang="plaintext"> hts_tpool_process_destroy@Base 1.4.1</span>
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529
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<pre style="margin: 0;">-<span id="LC529" class="line" lang="plaintext"> hts_tpool_process_detach@Base 1.4.1</span>
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530
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<pre style="margin: 0;">-<span id="LC530" class="line" lang="plaintext"> hts_tpool_process_empty@Base 1.4.1</span>
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531
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<pre style="margin: 0;">-<span id="LC531" class="line" lang="plaintext"> hts_tpool_process_flush@Base 1.4.1</span>
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532
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<pre style="margin: 0;">-<span id="LC532" class="line" lang="plaintext"> hts_tpool_process_init@Base 1.4.1</span>
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533
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<pre style="margin: 0;">-<span id="LC533" class="line" lang="plaintext"> hts_tpool_process_len@Base 1.4.1</span>
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534
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<pre style="margin: 0;">-<span id="LC534" class="line" lang="plaintext"> hts_tpool_process_qsize@Base 1.4.1</span>
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535
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<pre style="margin: 0;">-<span id="LC535" class="line" lang="plaintext"> hts_tpool_process_ref_decr@Base 1.4.1</span>
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536
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<pre style="margin: 0;">-<span id="LC536" class="line" lang="plaintext"> hts_tpool_process_ref_incr@Base 1.4.1</span>
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537
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<pre style="margin: 0;">-<span id="LC537" class="line" lang="plaintext"> hts_tpool_process_reset@Base 1.4.1</span>
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538
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<pre style="margin: 0;">-<span id="LC538" class="line" lang="plaintext"> hts_tpool_process_shutdown@Base 1.4.1</span>
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539
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<pre style="margin: 0;">-<span id="LC539" class="line" lang="plaintext"> hts_tpool_process_sz@Base 1.4.1</span>
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540
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<pre style="margin: 0;">-<span id="LC540" class="line" lang="plaintext"> hts_tpool_result_data@Base 1.4.1</span>
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541
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<pre style="margin: 0;">-<span id="LC541" class="line" lang="plaintext"> hts_tpool_size@Base 1.4.1</span>
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542
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<pre style="margin: 0;">-<span id="LC542" class="line" lang="plaintext"> hts_tpool_wake_dispatch@Base 1.4.1</span>
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543
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<pre style="margin: 0;">-<span id="LC543" class="line" lang="plaintext"> hts_useek@Base 1.0</span>
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544
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<pre style="margin: 0;">-<span id="LC544" class="line" lang="plaintext"> hts_utell@Base 1.0</span>
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545
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<pre style="margin: 0;">-<span id="LC545" class="line" lang="plaintext"> hts_verbose@Base 1.0</span>
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546
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<pre style="margin: 0;">-<span id="LC546" class="line" lang="plaintext"> hts_version@Base 1.0</span>
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547
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<pre style="margin: 0;">-<span id="LC547" class="line" lang="plaintext"> hwrite2@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC548" class="line" lang="plaintext"> int32_decode@Base 1.0</span>
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549
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<pre style="margin: 0;">-<span id="LC549" class="line" lang="plaintext"> int32_encode@Base 1.0</span>
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550
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<pre style="margin: 0;">-<span id="LC550" class="line" lang="plaintext"> int32_get_blk@Base 1.3</span>
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<td class="diff-line-num old old_line" data-linenumber="551" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
551
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<pre style="margin: 0;">-<span id="LC551" class="line" lang="plaintext"> int32_put_blk@Base 1.3</span>
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552
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<pre style="margin: 0;">-<span id="LC552" class="line" lang="plaintext"> is_directory@Base 1.0</span>
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553
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<pre style="margin: 0;">-<span id="LC553" class="line" lang="plaintext"> is_file@Base 1.0</span>
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554
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<pre style="margin: 0;">-<span id="LC554" class="line" lang="plaintext"> itf8_bytes@Base 1.3</span>
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555
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<pre style="margin: 0;">-<span id="LC555" class="line" lang="plaintext"> itf8_decode@Base 1.0</span>
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556
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<pre style="margin: 0;">-<span id="LC556" class="line" lang="plaintext"> itf8_decode_crc@Base 1.3</span>
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557
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<pre style="margin: 0;">-<span id="LC557" class="line" lang="plaintext"> itf8_encode@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="558" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
558
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<pre style="margin: 0;">-<span id="LC558" class="line" lang="plaintext"> itf8_put_blk@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="559" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
559
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC559" class="line" lang="plaintext"> kf_betai@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="560" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
560
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC560" class="line" lang="plaintext"> kf_erfc@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="561" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
561
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<pre style="margin: 0;">-<span id="LC561" class="line" lang="plaintext"> kf_gammap@Base 1.0</span>
</pre>
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562
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<pre style="margin: 0;">-<span id="LC562" class="line" lang="plaintext"> kf_gammaq@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="563" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
563
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</td>
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<pre style="margin: 0;">-<span id="LC563" class="line" lang="plaintext"> kf_lgamma@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="564" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
564
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<pre style="margin: 0;">-<span id="LC564" class="line" lang="plaintext"> kftp_connect@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="565" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
565
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<pre style="margin: 0;">-<span id="LC565" class="line" lang="plaintext"> kftp_connect_file@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="566" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
566
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</td>
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<pre style="margin: 0;">-<span id="LC566" class="line" lang="plaintext"> kftp_parse_url@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="567" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
567
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<pre style="margin: 0;">-<span id="LC567" class="line" lang="plaintext"> kftp_reconnect@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="568" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
568
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</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC568" class="line" lang="plaintext"> kgetline@Base 1.3</span>
</pre>
</td>
</tr>
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<td class="diff-line-num old old_line" data-linenumber="569" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
569
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</td>
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<pre style="margin: 0;">-<span id="LC569" class="line" lang="plaintext"> kh_clear_s2i@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="570" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
570
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</td>
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<pre style="margin: 0;">-<span id="LC570" class="line" lang="plaintext"> kh_del_s2i@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="571" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
571
</td>
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</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC571" class="line" lang="plaintext"> kh_destroy_s2i@Base 1.0</span>
</pre>
</td>
</tr>
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<td class="diff-line-num old old_line" data-linenumber="572" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
572
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</td>
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<pre style="margin: 0;">-<span id="LC572" class="line" lang="plaintext"> kh_get_s2i@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="573" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
573
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</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC573" class="line" lang="plaintext"> kh_init_s2i@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
574
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC574" class="line" lang="plaintext"> kh_put_s2i@Base 1.0</span>
</pre>
</td>
</tr>
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<td class="diff-line-num old old_line" data-linenumber="575" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
575
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC575" class="line" lang="plaintext"> kh_resize_s2i@Base 1.0</span>
</pre>
</td>
</tr>
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<td class="diff-line-num old old_line" data-linenumber="576" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
576
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC576" class="line" lang="plaintext"> khttp_connect_file@Base 1.0</span>
</pre>
</td>
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<td class="diff-line-num old old_line" data-linenumber="577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
577
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC577" class="line" lang="plaintext"> khttp_parse_url@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="578" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
578
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC578" class="line" lang="plaintext"> kmemmem@Base 1.0</span>
</pre>
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579
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<pre style="margin: 0;">-<span id="LC579" class="line" lang="plaintext"> knet_close@Base 1.0</span>
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580
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<pre style="margin: 0;">-<span id="LC580" class="line" lang="plaintext"> knet_dopen@Base 1.0</span>
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581
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<pre style="margin: 0;">-<span id="LC581" class="line" lang="plaintext"> knet_open@Base 1.0</span>
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582
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<pre style="margin: 0;">-<span id="LC582" class="line" lang="plaintext"> knet_read@Base 1.0</span>
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583
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<pre style="margin: 0;">-<span id="LC583" class="line" lang="plaintext"> knet_seek@Base 1.0</span>
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584
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<pre style="margin: 0;">-<span id="LC584" class="line" lang="plaintext"> kputd@Base 1.4.1</span>
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585
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<pre style="margin: 0;">-<span id="LC585" class="line" lang="plaintext"> ks_combsort__off@Base 1.0</span>
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586
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<pre style="margin: 0;">-<span id="LC586" class="line" lang="plaintext"> ks_combsort__off_max@Base 1.7</span>
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587
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<pre style="margin: 0;">-<span id="LC587" class="line" lang="plaintext"> ks_combsort_uint16_t@Base 1.4.1</span>
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588
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<pre style="margin: 0;">-<span id="LC588" class="line" lang="plaintext"> ks_heapadjust__off@Base 1.0</span>
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589
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<pre style="margin: 0;">-<span id="LC589" class="line" lang="plaintext"> ks_heapadjust__off_max@Base 1.7</span>
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590
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<pre style="margin: 0;">-<span id="LC590" class="line" lang="plaintext"> ks_heapadjust_uint16_t@Base 1.4.1</span>
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591
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<pre style="margin: 0;">-<span id="LC591" class="line" lang="plaintext"> ks_heapmake__off@Base 1.0</span>
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592
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<pre style="margin: 0;">-<span id="LC592" class="line" lang="plaintext"> ks_heapmake__off_max@Base 1.7</span>
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593
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<pre style="margin: 0;">-<span id="LC593" class="line" lang="plaintext"> ks_heapmake_uint16_t@Base 1.4.1</span>
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594
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<pre style="margin: 0;">-<span id="LC594" class="line" lang="plaintext"> ks_heapsort__off@Base 1.0</span>
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595
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<pre style="margin: 0;">-<span id="LC595" class="line" lang="plaintext"> ks_heapsort__off_max@Base 1.7</span>
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596
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<pre style="margin: 0;">-<span id="LC596" class="line" lang="plaintext"> ks_heapsort_uint16_t@Base 1.4.1</span>
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597
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<pre style="margin: 0;">-<span id="LC597" class="line" lang="plaintext"> ks_introsort__off@Base 1.0</span>
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598
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<pre style="margin: 0;">-<span id="LC598" class="line" lang="plaintext"> ks_introsort__off_max@Base 1.7</span>
</pre>
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599
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<pre style="margin: 0;">-<span id="LC599" class="line" lang="plaintext"> ks_introsort_uint16_t@Base 1.4.1</span>
</pre>
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600
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<pre style="margin: 0;">-<span id="LC600" class="line" lang="plaintext"> ks_ksmall__off@Base 1.0</span>
</pre>
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601
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<pre style="margin: 0;">-<span id="LC601" class="line" lang="plaintext"> ks_ksmall__off_max@Base 1.7</span>
</pre>
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602
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<pre style="margin: 0;">-<span id="LC602" class="line" lang="plaintext"> ks_ksmall_uint16_t@Base 1.4.1</span>
</pre>
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603
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<pre style="margin: 0;">-<span id="LC603" class="line" lang="plaintext"> ks_mergesort__off@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="604" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
604
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<pre style="margin: 0;">-<span id="LC604" class="line" lang="plaintext"> ks_mergesort__off_max@Base 1.7</span>
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605
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<pre style="margin: 0;">-<span id="LC605" class="line" lang="plaintext"> ks_mergesort_uint16_t@Base 1.4.1</span>
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606
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<pre style="margin: 0;">-<span id="LC606" class="line" lang="plaintext"> ks_shuffle__off@Base 1.0</span>
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607
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<pre style="margin: 0;">-<span id="LC607" class="line" lang="plaintext"> ks_shuffle__off_max@Base 1.7</span>
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608
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<pre style="margin: 0;">-<span id="LC608" class="line" lang="plaintext"> ks_shuffle_uint16_t@Base 1.4.1</span>
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609
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<pre style="margin: 0;">-<span id="LC609" class="line" lang="plaintext"> ksplit_core@Base 1.0</span>
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610
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<pre style="margin: 0;">-<span id="LC610" class="line" lang="plaintext"> ksprintf@Base 1.0</span>
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611
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<pre style="margin: 0;">-<span id="LC611" class="line" lang="plaintext"> kstrnstr@Base 1.0</span>
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612
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<pre style="margin: 0;">-<span id="LC612" class="line" lang="plaintext"> kstrstr@Base 1.0</span>
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613
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<pre style="margin: 0;">-<span id="LC613" class="line" lang="plaintext"> kstrtok@Base 1.0</span>
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614
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<pre style="margin: 0;">-<span id="LC614" class="line" lang="plaintext"> kt_fisher_exact@Base 1.0</span>
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615
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<pre style="margin: 0;">-<span id="LC615" class="line" lang="plaintext"> kvsprintf@Base 1.0</span>
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616
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<pre style="margin: 0;">-<span id="LC616" class="line" lang="plaintext"> ltf8_bytes@Base 1.4.1</span>
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<td class="diff-line-num old old_line" data-linenumber="617" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
617
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<pre style="margin: 0;">-<span id="LC617" class="line" lang="plaintext"> ltf8_decode@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="618" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
618
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<pre style="margin: 0;">-<span id="LC618" class="line" lang="plaintext"> ltf8_decode_crc@Base 1.3</span>
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<td class="diff-line-num old old_line" data-linenumber="619" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
619
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<pre style="margin: 0;">-<span id="LC619" class="line" lang="plaintext"> merge_vsets@Base 1.4.1</span>
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620
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<pre style="margin: 0;">-<span id="LC620" class="line" lang="plaintext"> mfascii@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
621
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<pre style="margin: 0;">-<span id="LC621" class="line" lang="plaintext"> mfclose@Base 1.0</span>
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622
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<pre style="margin: 0;">-<span id="LC622" class="line" lang="plaintext"> mfcreate@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="623" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
623
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<pre style="margin: 0;">-<span id="LC623" class="line" lang="plaintext"> mfcreate_from@Base 1.0</span>
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624
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<pre style="margin: 0;">-<span id="LC624" class="line" lang="plaintext"> mfdestroy@Base 1.0</span>
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625
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<pre style="margin: 0;">-<span id="LC625" class="line" lang="plaintext"> mfdetach@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="626" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
626
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<pre style="margin: 0;">-<span id="LC626" class="line" lang="plaintext"> mfeof@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="627" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
627
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<pre style="margin: 0;">-<span id="LC627" class="line" lang="plaintext"> mfflush@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="628" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
628
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<pre style="margin: 0;">-<span id="LC628" class="line" lang="plaintext"> mfgetc@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="629" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
629
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<pre style="margin: 0;">-<span id="LC629" class="line" lang="plaintext"> mfgets@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="630" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
630
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<pre style="margin: 0;">-<span id="LC630" class="line" lang="plaintext"> mfmmap@Base 1.3</span>
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<pre style="margin: 0;">-<span id="LC631" class="line" lang="plaintext"> mfopen@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC632" class="line" lang="plaintext"> mfread@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC633" class="line" lang="plaintext"> mfrecreate@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC634" class="line" lang="plaintext"> mfreopen@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC635" class="line" lang="plaintext"> mfseek@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC636" class="line" lang="plaintext"> mfsteal@Base 1.0</span>
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637
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<pre style="margin: 0;">-<span id="LC637" class="line" lang="plaintext"> mftell@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC638" class="line" lang="plaintext"> mftruncate@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC639" class="line" lang="plaintext"> mfwrite@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC640" class="line" lang="plaintext"> mkdir_prefix@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC641" class="line" lang="plaintext"> mrewind@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC642" class="line" lang="plaintext"> mstderr@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC643" class="line" lang="plaintext"> mstdin@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC644" class="line" lang="plaintext"> mstdout@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC645" class="line" lang="plaintext"> mungetc@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC646" class="line" lang="plaintext"> open_path_mfile@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC647" class="line" lang="plaintext"> pairing_score@Base 1.4.1</span>
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<pre style="margin: 0;">-<span id="LC648" class="line" lang="plaintext"> pool_alloc@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC649" class="line" lang="plaintext"> pool_create@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC650" class="line" lang="plaintext"> pool_destroy@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC651" class="line" lang="plaintext"> pool_free@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC652" class="line" lang="plaintext"> probaln_glocal@Base 1.4.1</span>
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<pre style="margin: 0;">-<span id="LC653" class="line" lang="plaintext"> push_vset@Base 1.4.1</span>
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<pre style="margin: 0;">-<span id="LC654" class="line" lang="plaintext"> rans_compress@Base 1.2.1</span>
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655
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<pre style="margin: 0;">-<span id="LC655" class="line" lang="plaintext"> rans_compress_O0@Base 1.2.1</span>
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656
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<pre style="margin: 0;">-<span id="LC656" class="line" lang="plaintext"> rans_compress_O1@Base 1.2.1</span>
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657
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<pre style="margin: 0;">-<span id="LC657" class="line" lang="plaintext"> rans_uncompress@Base 1.2.1</span>
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658
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<pre style="margin: 0;">-<span id="LC658" class="line" lang="plaintext"> rans_uncompress_O0@Base 1.2.1</span>
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659
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<pre style="margin: 0;">-<span id="LC659" class="line" lang="plaintext"> rans_uncompress_O1@Base 1.2.1</span>
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660
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<pre style="margin: 0;">-<span id="LC660" class="line" lang="plaintext"> refs2id@Base 1.0</span>
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661
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<pre style="margin: 0;">-<span id="LC661" class="line" lang="plaintext"> refs_free@Base 1.0</span>
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662
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<pre style="margin: 0;">-<span id="LC662" class="line" lang="plaintext"> regidx_destroy@Base 1.2.1</span>
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663
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<pre style="margin: 0;">-<span id="LC663" class="line" lang="plaintext"> regidx_init@Base 1.2.1</span>
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664
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<pre style="margin: 0;">-<span id="LC664" class="line" lang="plaintext"> regidx_insert@Base 1.2.1</span>
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665
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<pre style="margin: 0;">-<span id="LC665" class="line" lang="plaintext"> regidx_nregs@Base 1.2.1</span>
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666
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<pre style="margin: 0;">-<span id="LC666" class="line" lang="plaintext"> regidx_overlap@Base 1.2.1</span>
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667
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<pre style="margin: 0;">-<span id="LC667" class="line" lang="plaintext"> regidx_parse_bed@Base 1.2.1</span>
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668
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<pre style="margin: 0;">-<span id="LC668" class="line" lang="plaintext"> regidx_parse_tab@Base 1.2.1</span>
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669
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<pre style="margin: 0;">-<span id="LC669" class="line" lang="plaintext"> regidx_seq_names@Base 1.2.1</span>
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670
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<pre style="margin: 0;">-<span id="LC670" class="line" lang="plaintext"> regidx_seq_nregs@Base 1.2.1</span>
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671
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<pre style="margin: 0;">-<span id="LC671" class="line" lang="plaintext"> remove_vset@Base 1.4.1</span>
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672
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<pre style="margin: 0;">-<span id="LC672" class="line" lang="plaintext"> sam_cap_mapq@Base 1.4.1</span>
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673
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<pre style="margin: 0;">-<span id="LC673" class="line" lang="plaintext"> sam_format1@Base 1.0</span>
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674
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<pre style="margin: 0;">-<span id="LC674" class="line" lang="plaintext"> sam_hdr_PG_ID@Base 1.0</span>
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675
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<pre style="margin: 0;">-<span id="LC675" class="line" lang="plaintext"> sam_hdr_add@Base 1.0</span>
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676
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<pre style="margin: 0;">-<span id="LC676" class="line" lang="plaintext"> sam_hdr_add_PG@Base 1.0</span>
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677
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<pre style="margin: 0;">-<span id="LC677" class="line" lang="plaintext"> sam_hdr_add_lines@Base 1.0</span>
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678
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<pre style="margin: 0;">-<span id="LC678" class="line" lang="plaintext"> sam_hdr_change_HD@Base 1.7</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="679" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
679
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<pre style="margin: 0;">-<span id="LC679" class="line" lang="plaintext"> sam_hdr_decr_ref@Base 1.0</span>
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680
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<pre style="margin: 0;">-<span id="LC680" class="line" lang="plaintext"> sam_hdr_dump@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="681" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
681
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<pre style="margin: 0;">-<span id="LC681" class="line" lang="plaintext"> sam_hdr_dup@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="682" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
682
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<pre style="margin: 0;">-<span id="LC682" class="line" lang="plaintext"> sam_hdr_find@Base 1.0</span>
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<pre style="margin: 0;">-<span id="LC683" class="line" lang="plaintext"> sam_hdr_find_key@Base 1.0</span>
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684
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<pre style="margin: 0;">-<span id="LC684" class="line" lang="plaintext"> sam_hdr_find_line@Base 1.0</span>
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685
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<pre style="margin: 0;">-<span id="LC685" class="line" lang="plaintext"> sam_hdr_find_rg@Base 1.0</span>
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686
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<pre style="margin: 0;">-<span id="LC686" class="line" lang="plaintext"> sam_hdr_free@Base 1.0</span>
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687
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<pre style="margin: 0;">-<span id="LC687" class="line" lang="plaintext"> sam_hdr_incr_ref@Base 1.0</span>
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688
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<pre style="margin: 0;">-<span id="LC688" class="line" lang="plaintext"> sam_hdr_length@Base 1.0</span>
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689
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<pre style="margin: 0;">-<span id="LC689" class="line" lang="plaintext"> sam_hdr_link_pg@Base 1.0</span>
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690
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<pre style="margin: 0;">-<span id="LC690" class="line" lang="plaintext"> sam_hdr_name2ref@Base 1.0</span>
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691
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<pre style="margin: 0;">-<span id="LC691" class="line" lang="plaintext"> sam_hdr_new@Base 1.0</span>
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692
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<pre style="margin: 0;">-<span id="LC692" class="line" lang="plaintext"> sam_hdr_parse@Base 1.0</span>
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693
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<pre style="margin: 0;">-<span id="LC693" class="line" lang="plaintext"> sam_hdr_parse_@Base 1.0</span>
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694
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<pre style="margin: 0;">-<span id="LC694" class="line" lang="plaintext"> sam_hdr_read@Base 1.0</span>
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695
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<pre style="margin: 0;">-<span id="LC695" class="line" lang="plaintext"> sam_hdr_rebuild@Base 1.0</span>
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696
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<pre style="margin: 0;">-<span id="LC696" class="line" lang="plaintext"> sam_hdr_sort_order@Base 1.3</span>
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697
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<pre style="margin: 0;">-<span id="LC697" class="line" lang="plaintext"> sam_hdr_str@Base 1.0</span>
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698
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<pre style="margin: 0;">-<span id="LC698" class="line" lang="plaintext"> sam_hdr_update@Base 1.0</span>
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699
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<pre style="margin: 0;">-<span id="LC699" class="line" lang="plaintext"> sam_hdr_vadd@Base 1.0</span>
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700
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<pre style="margin: 0;">-<span id="LC700" class="line" lang="plaintext"> sam_hdr_write@Base 1.0</span>
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701
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<pre style="margin: 0;">-<span id="LC701" class="line" lang="plaintext"> sam_index_build2@Base 1.3</span>
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702
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<pre style="margin: 0;">-<span id="LC702" class="line" lang="plaintext"> sam_index_build3@Base 1.4.1</span>
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703
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<pre style="margin: 0;">-<span id="LC703" class="line" lang="plaintext"> sam_index_build@Base 1.3</span>
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704
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<pre style="margin: 0;">-<span id="LC704" class="line" lang="plaintext"> sam_index_load2@Base 1.3</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="705" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
705
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<pre style="margin: 0;">-<span id="LC705" class="line" lang="plaintext"> sam_index_load@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="706" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
706
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<pre style="margin: 0;">-<span id="LC706" class="line" lang="plaintext"> sam_itr_queryi@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="707" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
707
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<pre style="margin: 0;">-<span id="LC707" class="line" lang="plaintext"> sam_itr_querys@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="708" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
708
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<pre style="margin: 0;">-<span id="LC708" class="line" lang="plaintext"> sam_itr_regions@Base 1.7</span>
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709
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<pre style="margin: 0;">-<span id="LC709" class="line" lang="plaintext"> sam_open_mode@Base 1.0</span>
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710
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<pre style="margin: 0;">-<span id="LC710" class="line" lang="plaintext"> sam_open_mode_opts@Base 1.3</span>
</pre>
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711
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<pre style="margin: 0;">-<span id="LC711" class="line" lang="plaintext"> sam_parse1@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="712" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
712
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<pre style="margin: 0;">-<span id="LC712" class="line" lang="plaintext"> sam_prob_realn@Base 1.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="713" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
713
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<pre style="margin: 0;">-<span id="LC713" class="line" lang="plaintext"> sam_read1@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="714" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
714
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<pre style="margin: 0;">-<span id="LC714" class="line" lang="plaintext"> sam_write1@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="715" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
715
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<pre style="margin: 0;">-<span id="LC715" class="line" lang="plaintext"> seq_nt16_int@Base 1.2.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="716" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
716
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<pre style="margin: 0;">-<span id="LC716" class="line" lang="plaintext"> seq_nt16_str@Base 1.0</span>
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<td class="diff-line-num old old_line" data-linenumber="717" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
717
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<pre style="margin: 0;">-<span id="LC717" class="line" lang="plaintext"> seq_nt16_table@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="718" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
718
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<pre style="margin: 0;">-<span id="LC718" class="line" lang="plaintext"> string_alloc@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="719" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
719
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</td>
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<pre style="margin: 0;">-<span id="LC719" class="line" lang="plaintext"> string_dup@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="720" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
720
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<pre style="margin: 0;">-<span id="LC720" class="line" lang="plaintext"> string_ndup@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="721" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
721
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<pre style="margin: 0;">-<span id="LC721" class="line" lang="plaintext"> string_pool_create@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="722" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
722
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<pre style="margin: 0;">-<span id="LC722" class="line" lang="plaintext"> string_pool_destroy@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="723" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
723
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<pre style="margin: 0;">-<span id="LC723" class="line" lang="plaintext"> stringify_argv@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="724" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
724
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</td>
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<pre style="margin: 0;">-<span id="LC724" class="line" lang="plaintext"> tbx_conf_bed@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="725" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
725
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</td>
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<pre style="margin: 0;">-<span id="LC725" class="line" lang="plaintext"> tbx_conf_gff@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="726" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
726
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</td>
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<pre style="margin: 0;">-<span id="LC726" class="line" lang="plaintext"> tbx_conf_psltbl@Base 1.0</span>
</pre>
</td>
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<td class="diff-line-num old old_line" data-linenumber="727" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
727
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</td>
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<pre style="margin: 0;">-<span id="LC727" class="line" lang="plaintext"> tbx_conf_sam@Base 1.0</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="728" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
728
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</td>
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<pre style="margin: 0;">-<span id="LC728" class="line" lang="plaintext"> tbx_conf_vcf@Base 1.0</span>
</pre>
</td>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="729" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
729
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC729" class="line" lang="plaintext"> tbx_destroy@Base 1.0</span>
</pre>
</td>
</tr>
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<td class="diff-line-num old old_line" data-linenumber="730" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
730
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</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC730" class="line" lang="plaintext"> tbx_index@Base 1.0</span>
</pre>
</td>
</tr>
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<td class="diff-line-num old old_line" data-linenumber="731" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
731
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</td>
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<pre style="margin: 0;">-<span id="LC731" class="line" lang="plaintext"> tbx_index_build2@Base 1.3</span>
</pre>
</td>
</tr>
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<td class="diff-line-num old old_line" data-linenumber="732" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
732
</td>
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</td>
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<pre style="margin: 0;">-<span id="LC732" class="line" lang="plaintext"> tbx_index_build3@Base 1.4.1</span>
</pre>
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</tr>
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<td class="diff-line-num old old_line" data-linenumber="733" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
733
</td>
<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC733" class="line" lang="plaintext"> tbx_index_build@Base 1.0</span>
</pre>
</td>
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<td class="diff-line-num old old_line" data-linenumber="734" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
734
</td>
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</td>
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<pre style="margin: 0;">-<span id="LC734" class="line" lang="plaintext"> tbx_index_load2@Base 1.3</span>
</pre>
</td>
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<pre style="margin: 0;">-<span id="LC735" class="line" lang="plaintext"> tbx_index_load@Base 1.0</span>
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736
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<pre style="margin: 0;">-<span id="LC736" class="line" lang="plaintext"> tbx_name2id@Base 1.0</span>
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737
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<pre style="margin: 0;">-<span id="LC737" class="line" lang="plaintext"> tbx_parse1@Base 1.0</span>
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738
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<pre style="margin: 0;">-<span id="LC738" class="line" lang="plaintext"> tbx_readrec@Base 1.0</span>
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739
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<pre style="margin: 0;">-<span id="LC739" class="line" lang="plaintext"> tbx_seqnames@Base 1.0</span>
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740
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<pre style="margin: 0;">-<span id="LC740" class="line" lang="plaintext"> tbx_set_meta@Base 1.0</span>
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741
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<pre style="margin: 0;">-<span id="LC741" class="line" lang="plaintext"> tokenise_search_path@Base 1.0</span>
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742
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<pre style="margin: 0;">-<span id="LC742" class="line" lang="plaintext"> vcf_format@Base 1.0</span>
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743
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<pre style="margin: 0;">-<span id="LC743" class="line" lang="plaintext"> vcf_hdr_read@Base 1.0</span>
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744
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<pre style="margin: 0;">-<span id="LC744" class="line" lang="plaintext"> vcf_hdr_write@Base 1.0</span>
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745
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<pre style="margin: 0;">-<span id="LC745" class="line" lang="plaintext"> vcf_parse@Base 1.0</span>
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746
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<pre style="margin: 0;">-<span id="LC746" class="line" lang="plaintext"> vcf_read@Base 1.0</span>
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747
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<pre style="margin: 0;">-<span id="LC747" class="line" lang="plaintext"> vcf_write@Base 1.0</span>
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748
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<pre style="margin: 0;">-<span id="LC748" class="line" lang="plaintext"> vcf_write_line@Base 1.0</span>
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749
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<pre style="margin: 0;">-<span id="LC749" class="line" lang="plaintext"> zlib_mem_inflate@Base 1.0</span></pre>
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<a href="https://salsa.debian.org/med-team/htslib/compare/bc910b7a1257cc17df26465f9d00eb0d3e92bc80...52415fa2e6ac93725e7c2edfe3d307011a3f8ee2#2f5814012a79d3a08214bb3007efa3b3a199233c"><strong>debian/libhts2.install</strong>
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<strong>debian/libhts3.install</strong>
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<a href="https://salsa.debian.org/med-team/htslib/compare/bc910b7a1257cc17df26465f9d00eb0d3e92bc80...52415fa2e6ac93725e7c2edfe3d307011a3f8ee2#6acd856226cbcb52e9d738b091e27200d6abb246"><strong>debian/libhts3.symbols</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libhts.so.3 libhts3 #MINVER#</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> bam_aux2A@Base 1.10</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> bam_aux2Z@Base 1.10</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> bam_aux2f@Base 1.10</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> bam_aux2i@Base 1.10</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> bam_auxB2f@Base 1.10</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> bam_auxB2i@Base 1.10</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> bam_auxB_len@Base 1.10</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> bam_aux_append@Base 1.10</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> bam_aux_del@Base 1.10</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> bam_aux_get@Base 1.10</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> bam_aux_update_array@Base 1.10</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> bam_aux_update_float@Base 1.10</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> bam_aux_update_int@Base 1.10</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> bam_aux_update_str@Base 1.10</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> bam_cigar2qlen@Base 1.10</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> bam_cigar2rlen@Base 1.10</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> bam_cigar_table@Base 1.10</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> bam_construct_seq@Base 1.10</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> bam_copy1@Base 1.10</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> bam_destroy1@Base 1.10</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> bam_dup1@Base 1.10</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> bam_endpos@Base 1.10</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> bam_flag2str@Base 1.10</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> bam_hdr_read@Base 1.10</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> bam_hdr_write@Base 1.10</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> bam_index_build@Base 1.10</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> bam_init1@Base 1.10</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> bam_mplp64_auto@Base 1.10</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> bam_mplp_auto@Base 1.10</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> bam_mplp_constructor@Base 1.10</span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> bam_mplp_destroy@Base 1.10</span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> bam_mplp_destructor@Base 1.10</span>
</pre>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> bam_mplp_init@Base 1.10</span>
</pre>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> bam_mplp_init_overlaps@Base 1.10</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> bam_mplp_reset@Base 1.10</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> bam_mplp_set_maxcnt@Base 1.10</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> bam_plp64_auto@Base 1.10</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> bam_plp64_next@Base 1.10</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> bam_plp_auto@Base 1.10</span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> bam_plp_constructor@Base 1.10</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> bam_plp_destroy@Base 1.10</span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> bam_plp_destructor@Base 1.10</span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> bam_plp_init@Base 1.10</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> bam_plp_init_overlaps@Base 1.10</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> bam_plp_insertion@Base 1.10</span>
</pre>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> bam_plp_next@Base 1.10</span>
</pre>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> bam_plp_push@Base 1.10</span>
</pre>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> bam_plp_reset@Base 1.10</span>
</pre>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> bam_plp_set_maxcnt@Base 1.10</span>
</pre>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> bam_read1@Base 1.10</span>
</pre>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> bam_set_qname@Base 1.10</span>
</pre>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> bam_str2flag@Base 1.10</span>
</pre>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> bam_write1@Base 1.10</span>
</pre>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> bcf_add_filter@Base 1.10</span>
</pre>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> bcf_add_id@Base 1.10</span>
</pre>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> bcf_calc_ac@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> bcf_clear@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> bcf_copy@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> bcf_destroy@Base 1.10</span>
</pre>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> bcf_dup@Base 1.10</span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> bcf_empty@Base 1.10</span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> bcf_enc_vchar@Base 1.10</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> bcf_enc_vfloat@Base 1.10</span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> bcf_enc_vint@Base 1.10</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> bcf_float_missing@Base 1.10</span>
</pre>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> bcf_float_vector_end@Base 1.10</span>
</pre>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> bcf_fmt_array@Base 1.10</span>
</pre>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> bcf_fmt_sized_array@Base 1.10</span>
</pre>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> bcf_get_fmt@Base 1.10</span>
</pre>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> bcf_get_fmt_id@Base 1.10</span>
</pre>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> bcf_get_format_string@Base 1.10</span>
</pre>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> bcf_get_format_values@Base 1.10</span>
</pre>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> bcf_get_info@Base 1.10</span>
</pre>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> bcf_get_info_id@Base 1.10</span>
</pre>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> bcf_get_info_values@Base 1.10</span>
</pre>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> bcf_get_variant_type@Base 1.10</span>
</pre>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> bcf_get_variant_types@Base 1.10</span>
</pre>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> bcf_gt_type@Base 1.10</span>
</pre>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> bcf_has_filter@Base 1.10</span>
</pre>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext"> bcf_hdr_add_hrec@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> bcf_hdr_add_sample@Base 1.10</span>
</pre>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> bcf_hdr_append@Base 1.10</span>
</pre>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> bcf_hdr_check_sanity@Base 1.10</span>
</pre>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> bcf_hdr_combine@Base 1.10</span>
</pre>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> bcf_hdr_destroy@Base 1.10</span>
</pre>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> bcf_hdr_dup@Base 1.10</span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> bcf_hdr_fmt_text@Base 1.10</span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> bcf_hdr_format@Base 1.10</span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> bcf_hdr_get_hrec@Base 1.10</span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> bcf_hdr_get_version@Base 1.10</span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> bcf_hdr_id2int@Base 1.10</span>
</pre>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"> bcf_hdr_init@Base 1.10</span>
</pre>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"> bcf_hdr_merge@Base 1.10</span>
</pre>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> bcf_hdr_parse@Base 1.10</span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext"> bcf_hdr_parse_line@Base 1.10</span>
</pre>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext"> bcf_hdr_parse_sample_line@Base 1.10</span>
</pre>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"> bcf_hdr_printf@Base 1.10</span>
</pre>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> bcf_hdr_read@Base 1.10</span>
</pre>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> bcf_hdr_remove@Base 1.10</span>
</pre>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> bcf_hdr_seqnames@Base 1.10</span>
</pre>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> bcf_hdr_set@Base 1.10</span>
</pre>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> bcf_hdr_set_samples@Base 1.10</span>
</pre>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"> bcf_hdr_set_version@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext"> bcf_hdr_subset@Base 1.10</span>
</pre>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> bcf_hdr_sync@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext"> bcf_hdr_write@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"> bcf_header_debug@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"> bcf_hrec_add_key@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> bcf_hrec_debug@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> bcf_hrec_destroy@Base 1.10</span>
</pre>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext"> bcf_hrec_dup@Base 1.10</span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext"> bcf_hrec_find_key@Base 1.10</span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext"> bcf_hrec_format@Base 1.10</span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> bcf_hrec_set_val@Base 1.10</span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext"> bcf_idx_init@Base 1.10</span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"> bcf_idx_save@Base 1.10</span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> bcf_index@Base 1.10</span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> bcf_index_build2@Base 1.10</span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> bcf_index_build3@Base 1.10</span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext"> bcf_index_build@Base 1.10</span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"> bcf_index_load2@Base 1.10</span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> bcf_index_load3@Base 1.10</span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> bcf_init@Base 1.10</span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"> bcf_is_snp@Base 1.10</span>
</pre>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext"> bcf_read@Base 1.10</span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"> bcf_readrec@Base 1.10</span>
</pre>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext"> bcf_remove_allele_set@Base 1.10</span>
</pre>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext"> bcf_remove_alleles@Base 1.10</span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext"> bcf_remove_filter@Base 1.10</span>
</pre>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"> bcf_sr_add_reader@Base 1.10</span>
</pre>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> bcf_sr_destroy@Base 1.10</span>
</pre>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> bcf_sr_destroy_threads@Base 1.10</span>
</pre>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> bcf_sr_init@Base 1.10</span>
</pre>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> bcf_sr_next_line@Base 1.10</span>
</pre>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext"> bcf_sr_regions_destroy@Base 1.10</span>
</pre>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"> bcf_sr_regions_flush@Base 1.10</span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"> bcf_sr_regions_init@Base 1.10</span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext"> bcf_sr_regions_next@Base 1.10</span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext"> bcf_sr_regions_overlap@Base 1.10</span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> bcf_sr_regions_seek@Base 1.10</span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"> bcf_sr_remove_reader@Base 1.10</span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext"> bcf_sr_seek@Base 1.10</span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="plaintext"> bcf_sr_set_opt@Base 1.10</span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"> bcf_sr_set_regions@Base 1.10</span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext"> bcf_sr_set_samples@Base 1.10</span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> bcf_sr_set_targets@Base 1.10</span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> bcf_sr_set_threads@Base 1.10</span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> bcf_sr_sort_add_active@Base 1.10</span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"> bcf_sr_sort_destroy@Base 1.10</span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"> bcf_sr_sort_init@Base 1.10</span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> bcf_sr_sort_next@Base 1.10</span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="plaintext"> bcf_sr_sort_remove_reader@Base 1.10</span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> bcf_sr_sort_reset@Base 1.10</span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext"> bcf_sr_sort_set_active@Base 1.10</span>
</pre>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext"> bcf_sr_strerror@Base 1.10</span>
</pre>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"> bcf_subset@Base 1.10</span>
</pre>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext"> bcf_subset_format@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"> bcf_sweep_bwd@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext"> bcf_sweep_destroy@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"> bcf_sweep_fwd@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext"> bcf_sweep_hdr@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="plaintext"> bcf_sweep_init@Base 1.10</span>
</pre>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext"> bcf_translate@Base 1.10</span>
</pre>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext"> bcf_trim_alleles@Base 1.10</span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext"> bcf_type_shift@Base 1.10</span>
</pre>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> bcf_unpack@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext"> bcf_update_alleles@Base 1.10</span>
</pre>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext"> bcf_update_alleles_str@Base 1.10</span>
</pre>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"> bcf_update_filter@Base 1.10</span>
</pre>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext"> bcf_update_format@Base 1.10</span>
</pre>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext"> bcf_update_format_string@Base 1.10</span>
</pre>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"> bcf_update_id@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"> bcf_update_info@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"> bcf_write@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"> bgzf_block_write@Base 1.10</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"> bgzf_check_EOF@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"> bgzf_close@Base 1.10</span>
</pre>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"> bgzf_compress@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext"> bgzf_compression@Base 1.10</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"> bgzf_dopen@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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182
</td>
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> bgzf_flush@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
183
</td>
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext"> bgzf_flush_try@Base 1.10</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
184
</td>
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext"> bgzf_getc@Base 1.10</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
185
</td>
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext"> bgzf_getline@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
186
</td>
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="plaintext"> bgzf_hfile@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
187
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC187" class="line" lang="plaintext"> bgzf_hopen@Base 1.10</span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
188
</td>
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext"> bgzf_idx_push@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"> bgzf_index_add_block@Base 1.10</span>
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<td class="diff-line-num new new_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext"> bgzf_index_build_init@Base 1.10</span>
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<td class="diff-line-num new new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext"> bgzf_index_destroy@Base 1.10</span>
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192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext"> bgzf_index_dump@Base 1.10</span>
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<td class="diff-line-num new new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext"> bgzf_index_dump_hfile@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext"> bgzf_index_load@Base 1.10</span>
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<td class="diff-line-num new new_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"> bgzf_index_load_hfile@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext"> bgzf_is_bgzf@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> bgzf_mt@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext"> bgzf_mt_read_block@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
199
</td>
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext"> bgzf_open@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext"> bgzf_peek@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext"> bgzf_raw_read@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext"> bgzf_raw_write@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="plaintext"> bgzf_read@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"> bgzf_read_block@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="plaintext"> bgzf_seek@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
206
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext"> bgzf_set_cache_size@Base 1.10</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
207
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext"> bgzf_thread_pool@Base 1.10</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
208
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"> bgzf_useek@Base 1.10</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
209
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext"> bgzf_utell@Base 1.10</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
210
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> bgzf_write@Base 1.10</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
211
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext"> cram_beta_decode_char@Base 1.10</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
212
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext"> cram_beta_decode_free@Base 1.10</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
213
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext"> cram_beta_decode_init@Base 1.10</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
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214
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="plaintext"> cram_beta_decode_int@Base 1.10</span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="plaintext"> cram_beta_decode_long@Base 1.10</span>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="plaintext"> cram_beta_encode_char@Base 1.10</span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext"> cram_beta_encode_free@Base 1.10</span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="plaintext"> cram_beta_encode_init@Base 1.10</span>
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219
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="plaintext"> cram_beta_encode_int@Base 1.10</span>
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220
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext"> cram_beta_encode_long@Base 1.10</span>
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221
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="plaintext"> cram_beta_encode_store@Base 1.10</span>
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222
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext"> cram_block_append@Base 1.10</span>
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223
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="plaintext"> cram_block_compression_hdr_decoder2encoder@Base 1.10</span>
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224
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="plaintext"> cram_block_compression_hdr_set_rg@Base 1.10</span>
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225
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="plaintext"> cram_block_get_comp_size@Base 1.10</span>
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226
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="plaintext"> cram_block_get_content_id@Base 1.10</span>
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227
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="plaintext"> cram_block_get_content_type@Base 1.10</span>
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228
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"> cram_block_get_crc32@Base 1.10</span>
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229
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="plaintext"> cram_block_get_data@Base 1.10</span>
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230
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="plaintext"> cram_block_get_offset@Base 1.10</span>
</pre>
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231
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="plaintext"> cram_block_get_size@Base 1.10</span>
</pre>
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232
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="plaintext"> cram_block_get_uncomp_size@Base 1.10</span>
</pre>
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233
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="plaintext"> cram_block_method2str@Base 1.10</span>
</pre>
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234
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="plaintext"> cram_block_set_comp_size@Base 1.10</span>
</pre>
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235
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="plaintext"> cram_block_set_content_id@Base 1.10</span>
</pre>
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236
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="plaintext"> cram_block_set_crc32@Base 1.10</span>
</pre>
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237
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext"> cram_block_set_data@Base 1.10</span>
</pre>
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238
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="plaintext"> cram_block_set_offset@Base 1.10</span>
</pre>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext"> cram_block_set_size@Base 1.10</span>
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240
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="plaintext"> cram_block_set_uncomp_size@Base 1.10</span>
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241
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="plaintext"> cram_block_size@Base 1.10</span>
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242
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="plaintext"> cram_block_update_size@Base 1.10</span>
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243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="plaintext"> cram_byte_array_len_decode@Base 1.10</span>
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244
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="plaintext"> cram_byte_array_len_decode_free@Base 1.10</span>
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245
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="plaintext"> cram_byte_array_len_decode_init@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="plaintext"> cram_byte_array_len_encode@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="plaintext"> cram_byte_array_len_encode_free@Base 1.10</span>
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248
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="plaintext"> cram_byte_array_len_encode_init@Base 1.10</span>
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249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="plaintext"> cram_byte_array_len_encode_store@Base 1.10</span>
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250
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="plaintext"> cram_byte_array_stop_decode_block@Base 1.10</span>
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251
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="plaintext"> cram_byte_array_stop_decode_free@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="plaintext"> cram_byte_array_stop_decode_init@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="plaintext"> cram_byte_array_stop_encode@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="plaintext"> cram_byte_array_stop_encode_free@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="plaintext"> cram_byte_array_stop_encode_init@Base 1.10</span>
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256
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext"> cram_byte_array_stop_encode_store@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="plaintext"> cram_check_EOF@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC258" class="line" lang="plaintext"> cram_close@Base 1.10</span>
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259
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="plaintext"> cram_codec_decoder2encoder@Base 1.10</span>
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260
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="plaintext"> cram_codec_to_id@Base 1.10</span>
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261
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="plaintext"> cram_compress_block@Base 1.10</span>
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262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="plaintext"> cram_container_get_landmarks@Base 1.10</span>
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263
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="plaintext"> cram_container_get_length@Base 1.10</span>
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264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="plaintext"> cram_container_get_num_blocks@Base 1.10</span>
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265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="plaintext"> cram_container_is_empty@Base 1.10</span>
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266
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="plaintext"> cram_container_set_landmarks@Base 1.10</span>
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267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="plaintext"> cram_container_set_length@Base 1.10</span>
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268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="plaintext"> cram_container_set_num_blocks@Base 1.10</span>
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269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="plaintext"> cram_container_size@Base 1.10</span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="plaintext"> cram_content_type2str@Base 1.10</span>
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<td class="diff-line-num new new_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="plaintext"> cram_copy_slice@Base 1.10</span>
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272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext"> cram_decode_TD@Base 1.10</span>
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext"> cram_decode_compression_header@Base 1.10</span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext"> cram_decode_estimate_sizes@Base 1.10</span>
</pre>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext"> cram_decode_slice@Base 1.10</span>
</pre>
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276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="plaintext"> cram_decode_slice_header@Base 1.10</span>
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<td class="diff-line-num new new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="plaintext"> cram_decode_slice_mt@Base 1.10</span>
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278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="plaintext"> cram_decode_slice_thread@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext"> cram_decoder_init@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="plaintext"> cram_dependent_data_series@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="plaintext"> cram_dopen@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="plaintext"> cram_drain_rqueue@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="plaintext"> cram_encode_compression_header@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="plaintext"> cram_encode_container@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="plaintext"> cram_encode_slice_header@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
286
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="plaintext"> cram_encoder_init@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
287
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="plaintext"> cram_encoding2str@Base 1.10</span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="plaintext"> cram_eof@Base 1.10</span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="plaintext"> cram_external_decode_char@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="plaintext"> cram_external_decode_free@Base 1.10</span>
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291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="plaintext"> cram_external_decode_init@Base 1.10</span>
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292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="plaintext"> cram_external_decode_int@Base 1.10</span>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="plaintext"> cram_external_decode_long@Base 1.10</span>
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294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="plaintext"> cram_external_encode_char@Base 1.10</span>
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295
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="plaintext"> cram_external_encode_free@Base 1.10</span>
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296
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="plaintext"> cram_external_encode_init@Base 1.10</span>
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297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="plaintext"> cram_external_encode_int@Base 1.10</span>
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298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="plaintext"> cram_external_encode_long@Base 1.10</span>
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299
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="plaintext"> cram_external_encode_store@Base 1.10</span>
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300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="plaintext"> cram_fd_get_fp@Base 1.10</span>
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301
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="plaintext"> cram_fd_get_header@Base 1.10</span>
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302
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="plaintext"> cram_fd_get_version@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="plaintext"> cram_fd_set_fp@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="plaintext"> cram_fd_set_header@Base 1.10</span>
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305
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="plaintext"> cram_fd_set_version@Base 1.10</span>
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306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="plaintext"> cram_flush@Base 1.10</span>
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307
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="plaintext"> cram_flush_container@Base 1.10</span>
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308
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="plaintext"> cram_flush_container_mt@Base 1.10</span>
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309
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="plaintext"> cram_flush_thread@Base 1.10</span>
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310
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="plaintext"> cram_free_block@Base 1.10</span>
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311
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="plaintext"> cram_free_compression_header@Base 1.10</span>
</pre>
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312
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="plaintext"> cram_free_container@Base 1.10</span>
</pre>
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313
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="plaintext"> cram_free_file_def@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
314
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="plaintext"> cram_free_slice@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
315
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="plaintext"> cram_free_slice_header@Base 1.10</span>
</pre>
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316
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="plaintext"> cram_gamma_decode@Base 1.10</span>
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317
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="plaintext"> cram_gamma_decode_free@Base 1.10</span>
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318
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="plaintext"> cram_gamma_decode_init@Base 1.10</span>
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319
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="plaintext"> cram_get_bam_seq@Base 1.10</span>
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320
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="plaintext"> cram_get_ref@Base 1.10</span>
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321
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="plaintext"> cram_get_refs@Base 1.10</span>
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322
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="plaintext"> cram_get_seq@Base 1.10</span>
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323
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="plaintext"> cram_huffman_decode_char0@Base 1.10</span>
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324
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="plaintext"> cram_huffman_decode_char@Base 1.10</span>
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325
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="plaintext"> cram_huffman_decode_free@Base 1.10</span>
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326
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="plaintext"> cram_huffman_decode_init@Base 1.10</span>
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327
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="plaintext"> cram_huffman_decode_int0@Base 1.10</span>
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328
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="plaintext"> cram_huffman_decode_int@Base 1.10</span>
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329
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="plaintext"> cram_huffman_decode_long0@Base 1.10</span>
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330
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="plaintext"> cram_huffman_decode_long@Base 1.10</span>
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331
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="plaintext"> cram_huffman_decode_null@Base 1.10</span>
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332
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="plaintext"> cram_huffman_encode_char0@Base 1.10</span>
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333
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="plaintext"> cram_huffman_encode_char@Base 1.10</span>
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334
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="plaintext"> cram_huffman_encode_free@Base 1.10</span>
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335
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="plaintext"> cram_huffman_encode_init@Base 1.10</span>
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336
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="plaintext"> cram_huffman_encode_int0@Base 1.10</span>
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337
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="plaintext"> cram_huffman_encode_int@Base 1.10</span>
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338
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="plaintext"> cram_huffman_encode_long0@Base 1.10</span>
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339
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="plaintext"> cram_huffman_encode_long@Base 1.10</span>
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340
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<pre style="margin: 0;">+<span id="LC340" class="line" lang="plaintext"> cram_huffman_encode_store@Base 1.10</span>
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341
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="plaintext"> cram_index_build@Base 1.10</span>
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342
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="plaintext"> cram_index_free@Base 1.10</span>
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343
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="plaintext"> cram_index_last@Base 1.10</span>
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344
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="plaintext"> cram_index_load@Base 1.10</span>
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345
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="plaintext"> cram_index_query@Base 1.10</span>
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346
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="plaintext"> cram_index_slice@Base 1.10</span>
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347
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="plaintext"> cram_load_reference@Base 1.10</span>
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348
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="plaintext"> cram_major_vers@Base 1.10</span>
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349
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="plaintext"> cram_minor_vers@Base 1.10</span>
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350
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="plaintext"> cram_new_block@Base 1.10</span>
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351
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="plaintext"> cram_new_compression_header@Base 1.10</span>
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352
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="plaintext"> cram_new_container@Base 1.10</span>
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353
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="plaintext"> cram_new_metrics@Base 1.10</span>
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354
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="plaintext"> cram_new_slice@Base 1.10</span>
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355
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="plaintext"> cram_open@Base 1.10</span>
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356
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="plaintext"> cram_put_bam_seq@Base 1.10</span>
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357
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="plaintext"> cram_read_SAM_hdr@Base 1.10</span>
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358
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="plaintext"> cram_read_block@Base 1.10</span>
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359
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="plaintext"> cram_read_container@Base 1.10</span>
</pre>
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360
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="plaintext"> cram_read_file_def@Base 1.10</span>
</pre>
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361
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="plaintext"> cram_read_slice@Base 1.10</span>
</pre>
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362
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="plaintext"> cram_ref_decr@Base 1.10</span>
</pre>
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363
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<pre style="margin: 0;">+<span id="LC363" class="line" lang="plaintext"> cram_ref_incr@Base 1.10</span>
</pre>
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364
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="plaintext"> cram_ref_load@Base 1.10</span>
</pre>
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365
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="plaintext"> cram_seek@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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366
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="plaintext"> cram_seek_to_refpos@Base 1.10</span>
</pre>
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367
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="plaintext"> cram_set_header2@Base 1.10</span>
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368
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="plaintext"> cram_set_header@Base 1.10</span>
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369
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="plaintext"> cram_set_option@Base 1.10</span>
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370
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="plaintext"> cram_set_voption@Base 1.10</span>
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371
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="plaintext"> cram_slice_hdr_get_num_blocks@Base 1.10</span>
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372
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="plaintext"> cram_stats_add@Base 1.10</span>
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373
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="plaintext"> cram_stats_create@Base 1.10</span>
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374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="plaintext"> cram_stats_del@Base 1.10</span>
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375
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="plaintext"> cram_stats_encoding@Base 1.10</span>
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376
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="plaintext"> cram_stats_free@Base 1.10</span>
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377
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="plaintext"> cram_store_container@Base 1.10</span>
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378
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="plaintext"> cram_subexp_decode@Base 1.10</span>
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379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="plaintext"> cram_subexp_decode_free@Base 1.10</span>
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380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="plaintext"> cram_subexp_decode_init@Base 1.10</span>
</pre>
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381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="plaintext"> cram_transcode_rg@Base 1.10</span>
</pre>
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382
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="plaintext"> cram_uncompress_block@Base 1.10</span>
</pre>
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383
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="plaintext"> cram_update_curr_slice@Base 1.10</span>
</pre>
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384
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="plaintext"> cram_write_SAM_hdr@Base 1.10</span>
</pre>
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385
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="plaintext"> cram_write_block@Base 1.10</span>
</pre>
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386
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="plaintext"> cram_write_container@Base 1.10</span>
</pre>
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387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="plaintext"> cram_write_file_def@Base 1.10</span>
</pre>
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388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="plaintext"> errmod_cal@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="plaintext"> errmod_destroy@Base 1.10</span>
</pre>
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390
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="plaintext"> errmod_init@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="391" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
391
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="plaintext"> fai_build3@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="plaintext"> fai_build@Base 1.10</span>
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393
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="plaintext"> fai_destroy@Base 1.10</span>
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394
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="plaintext"> fai_fetch64@Base 1.10</span>
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395
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="plaintext"> fai_fetch@Base 1.10</span>
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396
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<pre style="margin: 0;">+<span id="LC396" class="line" lang="plaintext"> fai_fetchqual64@Base 1.10</span>
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397
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<pre style="margin: 0;">+<span id="LC397" class="line" lang="plaintext"> fai_fetchqual@Base 1.10</span>
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398
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="plaintext"> fai_load3@Base 1.10</span>
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399
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="plaintext"> fai_load3_format@Base 1.10</span>
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400
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="plaintext"> fai_load@Base 1.10</span>
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401
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="plaintext"> fai_load_format@Base 1.10</span>
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402
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<pre style="margin: 0;">+<span id="LC402" class="line" lang="plaintext"> fai_parse_region@Base 1.10</span>
</pre>
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403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="plaintext"> fai_set_cache_size@Base 1.10</span>
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404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="plaintext"> faidx_fetch_nseq@Base 1.10</span>
</pre>
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405
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<pre style="margin: 0;">+<span id="LC405" class="line" lang="plaintext"> faidx_fetch_qual64@Base 1.10</span>
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406
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="plaintext"> faidx_fetch_qual@Base 1.10</span>
</pre>
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407
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="plaintext"> faidx_fetch_seq64@Base 1.10</span>
</pre>
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408
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<pre style="margin: 0;">+<span id="LC408" class="line" lang="plaintext"> faidx_fetch_seq@Base 1.10</span>
</pre>
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409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="plaintext"> faidx_has_seq@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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410
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="plaintext"> faidx_iseq@Base 1.10</span>
</pre>
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411
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="plaintext"> faidx_nseq@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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412
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="plaintext"> faidx_seq_len@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
413
</td>
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="plaintext"> find_file_url@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
414
</td>
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="plaintext"> find_path@Base 1.10</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
415
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC415" class="line" lang="plaintext"> haddextension@Base 1.10</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="416" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
416
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC416" class="line" lang="plaintext"> hclose@Base 1.10</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
417
</td>
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="plaintext"> hclose_abruptly@Base 1.10</span>
</pre>
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</tr>
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418
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="plaintext"> hdopen@Base 1.10</span>
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419
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="plaintext"> hfile_add_scheme_handler@Base 1.10</span>
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420
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="plaintext"> hfile_always_local@Base 1.10</span>
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421
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="plaintext"> hfile_always_remote@Base 1.10</span>
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422
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<pre style="margin: 0;">+<span id="LC422" class="line" lang="plaintext"> hfile_destroy@Base 1.10</span>
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423
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="plaintext"> hfile_init@Base 1.10</span>
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424
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<pre style="margin: 0;">+<span id="LC424" class="line" lang="plaintext"> hfile_init_fixed@Base 1.10</span>
</pre>
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425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="plaintext"> hfile_mem_get_buffer@Base 1.10</span>
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426
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="plaintext"> hfile_mem_steal_buffer@Base 1.10</span>
</pre>
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427
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<pre style="margin: 0;">+<span id="LC427" class="line" lang="plaintext"> hfile_oflags@Base 1.10</span>
</pre>
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428
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<pre style="margin: 0;">+<span id="LC428" class="line" lang="plaintext"> hfile_plugin_init_gcs@Base 1.10</span>
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429
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="plaintext"> hfile_plugin_init_libcurl@Base 1.10</span>
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430
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="plaintext"> hfile_plugin_init_mem@Base 1.10</span>
</pre>
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431
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="plaintext"> hfile_plugin_init_net@Base 1.10</span>
</pre>
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432
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="plaintext"> hfile_plugin_init_s3@Base 1.10</span>
</pre>
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433
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="plaintext"> hfile_plugin_init_s3_write@Base 1.10</span>
</pre>
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434
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="plaintext"> hfile_set_blksize@Base 1.10</span>
</pre>
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435
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="plaintext"> hflush@Base 1.10</span>
</pre>
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436
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="plaintext"> hgetc2@Base 1.10</span>
</pre>
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437
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="plaintext"> hgetdelim@Base 1.10</span>
</pre>
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438
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="plaintext"> hgets@Base 1.10</span>
</pre>
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439
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="plaintext"> hisremote@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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440
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="plaintext"> hopen@Base 1.10</span>
</pre>
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441
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="plaintext"> hopen_htsget_redirect@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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442
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="plaintext"> hopen_net@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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443
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<pre style="margin: 0;">+<span id="LC443" class="line" lang="plaintext"> hpeek@Base 1.10</span>
</pre>
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<pre style="margin: 0;">+<span id="LC444" class="line" lang="plaintext"> hputc2@Base 1.10</span>
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445
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<pre style="margin: 0;">+<span id="LC445" class="line" lang="plaintext"> hputs2@Base 1.10</span>
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446
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<pre style="margin: 0;">+<span id="LC446" class="line" lang="plaintext"> hread2@Base 1.10</span>
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447
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<pre style="margin: 0;">+<span id="LC447" class="line" lang="plaintext"> hrec_add_idx@Base 1.10</span>
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448
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<pre style="margin: 0;">+<span id="LC448" class="line" lang="plaintext"> hseek@Base 1.10</span>
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449
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<pre style="margin: 0;">+<span id="LC449" class="line" lang="plaintext"> hts_base64_decoded_length@Base 1.10</span>
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450
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<pre style="margin: 0;">+<span id="LC450" class="line" lang="plaintext"> hts_check_EOF@Base 1.10</span>
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451
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<pre style="margin: 0;">+<span id="LC451" class="line" lang="plaintext"> hts_close@Base 1.10</span>
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452
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<pre style="margin: 0;">+<span id="LC452" class="line" lang="plaintext"> hts_decode_base64@Base 1.10</span>
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453
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<pre style="margin: 0;">+<span id="LC453" class="line" lang="plaintext"> hts_decode_percent@Base 1.10</span>
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454
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<pre style="margin: 0;">+<span id="LC454" class="line" lang="plaintext"> hts_detect_format@Base 1.10</span>
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455
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<pre style="margin: 0;">+<span id="LC455" class="line" lang="plaintext"> hts_drand48@Base 1.10</span>
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456
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<pre style="margin: 0;">+<span id="LC456" class="line" lang="plaintext"> hts_erand48@Base 1.10</span>
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457
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<pre style="margin: 0;">+<span id="LC457" class="line" lang="plaintext"> hts_file_type@Base 1.10</span>
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458
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<pre style="margin: 0;">+<span id="LC458" class="line" lang="plaintext"> hts_format_description@Base 1.10</span>
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459
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="plaintext"> hts_format_file_extension@Base 1.10</span>
</pre>
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460
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<pre style="margin: 0;">+<span id="LC460" class="line" lang="plaintext"> hts_free@Base 1.10</span>
</pre>
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461
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<pre style="margin: 0;">+<span id="LC461" class="line" lang="plaintext"> hts_get_bgzfp@Base 1.10</span>
</pre>
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462
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<pre style="margin: 0;">+<span id="LC462" class="line" lang="plaintext"> hts_get_format@Base 1.10</span>
</pre>
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463
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<pre style="margin: 0;">+<span id="LC463" class="line" lang="plaintext"> hts_get_log_level@Base 1.10</span>
</pre>
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464
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<pre style="margin: 0;">+<span id="LC464" class="line" lang="plaintext"> hts_getline@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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465
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="plaintext"> hts_hopen@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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466
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="plaintext"> hts_idx_destroy@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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467
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<pre style="margin: 0;">+<span id="LC467" class="line" lang="plaintext"> hts_idx_finish@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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468
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="plaintext"> hts_idx_fmt@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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469
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="plaintext"> hts_idx_get_meta@Base 1.10</span>
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470
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="plaintext"> hts_idx_get_n_no_coor@Base 1.10</span>
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471
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="plaintext"> hts_idx_get_stat@Base 1.10</span>
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472
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="plaintext"> hts_idx_init@Base 1.10</span>
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473
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<pre style="margin: 0;">+<span id="LC473" class="line" lang="plaintext"> hts_idx_load2@Base 1.10</span>
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474
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<pre style="margin: 0;">+<span id="LC474" class="line" lang="plaintext"> hts_idx_load3@Base 1.10</span>
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475
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<pre style="margin: 0;">+<span id="LC475" class="line" lang="plaintext"> hts_idx_load@Base 1.10</span>
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476
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="plaintext"> hts_idx_push@Base 1.10</span>
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477
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<pre style="margin: 0;">+<span id="LC477" class="line" lang="plaintext"> hts_idx_save@Base 1.10</span>
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478
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<pre style="margin: 0;">+<span id="LC478" class="line" lang="plaintext"> hts_idx_save_as@Base 1.10</span>
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479
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<pre style="margin: 0;">+<span id="LC479" class="line" lang="plaintext"> hts_idx_seqnames@Base 1.10</span>
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480
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="plaintext"> hts_idx_set_meta@Base 1.10</span>
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481
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<pre style="margin: 0;">+<span id="LC481" class="line" lang="plaintext"> hts_idx_tbi_name@Base 1.10</span>
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482
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="plaintext"> hts_itr_destroy@Base 1.10</span>
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483
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<pre style="margin: 0;">+<span id="LC483" class="line" lang="plaintext"> hts_itr_multi_bam@Base 1.10</span>
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484
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="plaintext"> hts_itr_multi_cram@Base 1.10</span>
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485
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="plaintext"> hts_itr_multi_next@Base 1.10</span>
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486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="plaintext"> hts_itr_next@Base 1.10</span>
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487
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<pre style="margin: 0;">+<span id="LC487" class="line" lang="plaintext"> hts_itr_query@Base 1.10</span>
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488
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<pre style="margin: 0;">+<span id="LC488" class="line" lang="plaintext"> hts_itr_querys@Base 1.10</span>
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489
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="plaintext"> hts_itr_regions@Base 1.10</span>
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490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="plaintext"> hts_json_alloc_token@Base 1.10</span>
</pre>
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491
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="plaintext"> hts_json_fnext@Base 1.10</span>
</pre>
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492
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<pre style="margin: 0;">+<span id="LC492" class="line" lang="plaintext"> hts_json_free_token@Base 1.10</span>
</pre>
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493
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<pre style="margin: 0;">+<span id="LC493" class="line" lang="plaintext"> hts_json_fskip_value@Base 1.10</span>
</pre>
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494
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<pre style="margin: 0;">+<span id="LC494" class="line" lang="plaintext"> hts_json_snext@Base 1.10</span>
</pre>
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495
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<pre style="margin: 0;">+<span id="LC495" class="line" lang="plaintext"> hts_json_sskip_value@Base 1.10</span>
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496
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<pre style="margin: 0;">+<span id="LC496" class="line" lang="plaintext"> hts_json_token_str@Base 1.10</span>
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497
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="plaintext"> hts_json_token_type@Base 1.10</span>
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498
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="plaintext"> hts_log@Base 1.10</span>
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499
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<pre style="margin: 0;">+<span id="LC499" class="line" lang="plaintext"> hts_lrand48@Base 1.10</span>
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500
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<pre style="margin: 0;">+<span id="LC500" class="line" lang="plaintext"> hts_md5_destroy@Base 1.10</span>
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501
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="plaintext"> hts_md5_final@Base 1.10</span>
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502
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<pre style="margin: 0;">+<span id="LC502" class="line" lang="plaintext"> hts_md5_hex@Base 1.10</span>
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503
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<pre style="margin: 0;">+<span id="LC503" class="line" lang="plaintext"> hts_md5_init@Base 1.10</span>
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504
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<pre style="margin: 0;">+<span id="LC504" class="line" lang="plaintext"> hts_md5_reset@Base 1.10</span>
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505
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<pre style="margin: 0;">+<span id="LC505" class="line" lang="plaintext"> hts_md5_update@Base 1.10</span>
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506
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<pre style="margin: 0;">+<span id="LC506" class="line" lang="plaintext"> hts_open@Base 1.10</span>
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507
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<pre style="margin: 0;">+<span id="LC507" class="line" lang="plaintext"> hts_open_format@Base 1.10</span>
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508
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="plaintext"> hts_opt_add@Base 1.10</span>
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509
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<pre style="margin: 0;">+<span id="LC509" class="line" lang="plaintext"> hts_opt_apply@Base 1.10</span>
</pre>
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510
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="plaintext"> hts_opt_free@Base 1.10</span>
</pre>
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511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="plaintext"> hts_parse_decimal@Base 1.10</span>
</pre>
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512
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="plaintext"> hts_parse_format@Base 1.10</span>
</pre>
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513
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="plaintext"> hts_parse_opt_list@Base 1.10</span>
</pre>
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514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="plaintext"> hts_parse_reg64@Base 1.10</span>
</pre>
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515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="plaintext"> hts_parse_reg@Base 1.10</span>
</pre>
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516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="plaintext"> hts_parse_region@Base 1.10</span>
</pre>
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517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="plaintext"> hts_readlines@Base 1.10</span>
</pre>
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518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="plaintext"> hts_readlist@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="plaintext"> hts_realloc_or_die@Base 1.10</span>
</pre>
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520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="plaintext"> hts_reglist_create@Base 1.10</span>
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521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="plaintext"> hts_reglist_free@Base 1.10</span>
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522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="plaintext"> hts_resize_array_@Base 1.10</span>
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523
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="plaintext"> hts_set_cache_size@Base 1.10</span>
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524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="plaintext"> hts_set_fai_filename@Base 1.10</span>
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525
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="plaintext"> hts_set_log_level@Base 1.10</span>
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526
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="plaintext"> hts_set_opt@Base 1.10</span>
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527
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="plaintext"> hts_set_thread_pool@Base 1.10</span>
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528
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="plaintext"> hts_set_threads@Base 1.10</span>
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529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="plaintext"> hts_srand48@Base 1.10</span>
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530
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="plaintext"> hts_tpool_delete_result@Base 1.10</span>
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531
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="plaintext"> hts_tpool_destroy@Base 1.10</span>
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532
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="plaintext"> hts_tpool_dispatch2@Base 1.10</span>
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533
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="plaintext"> hts_tpool_dispatch3@Base 1.10</span>
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534
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="plaintext"> hts_tpool_dispatch@Base 1.10</span>
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535
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="plaintext"> hts_tpool_init@Base 1.10</span>
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536
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="plaintext"> hts_tpool_kill@Base 1.10</span>
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537
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<pre style="margin: 0;">+<span id="LC537" class="line" lang="plaintext"> hts_tpool_next_result@Base 1.10</span>
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538
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="plaintext"> hts_tpool_next_result_wait@Base 1.10</span>
</pre>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="plaintext"> hts_tpool_process_attach@Base 1.10</span>
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540
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="plaintext"> hts_tpool_process_destroy@Base 1.10</span>
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541
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<pre style="margin: 0;">+<span id="LC541" class="line" lang="plaintext"> hts_tpool_process_detach@Base 1.10</span>
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542
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<pre style="margin: 0;">+<span id="LC542" class="line" lang="plaintext"> hts_tpool_process_empty@Base 1.10</span>
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543
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<pre style="margin: 0;">+<span id="LC543" class="line" lang="plaintext"> hts_tpool_process_flush@Base 1.10</span>
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544
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<pre style="margin: 0;">+<span id="LC544" class="line" lang="plaintext"> hts_tpool_process_init@Base 1.10</span>
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545
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<pre style="margin: 0;">+<span id="LC545" class="line" lang="plaintext"> hts_tpool_process_len@Base 1.10</span>
</pre>
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546
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<pre style="margin: 0;">+<span id="LC546" class="line" lang="plaintext"> hts_tpool_process_qsize@Base 1.10</span>
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547
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<pre style="margin: 0;">+<span id="LC547" class="line" lang="plaintext"> hts_tpool_process_ref_decr@Base 1.10</span>
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548
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<pre style="margin: 0;">+<span id="LC548" class="line" lang="plaintext"> hts_tpool_process_ref_incr@Base 1.10</span>
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549
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<pre style="margin: 0;">+<span id="LC549" class="line" lang="plaintext"> hts_tpool_process_reset@Base 1.10</span>
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550
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<pre style="margin: 0;">+<span id="LC550" class="line" lang="plaintext"> hts_tpool_process_shutdown@Base 1.10</span>
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551
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<pre style="margin: 0;">+<span id="LC551" class="line" lang="plaintext"> hts_tpool_process_sz@Base 1.10</span>
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552
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<pre style="margin: 0;">+<span id="LC552" class="line" lang="plaintext"> hts_tpool_result_data@Base 1.10</span>
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553
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<pre style="margin: 0;">+<span id="LC553" class="line" lang="plaintext"> hts_tpool_size@Base 1.10</span>
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554
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<pre style="margin: 0;">+<span id="LC554" class="line" lang="plaintext"> hts_tpool_wake_dispatch@Base 1.10</span>
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555
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<pre style="margin: 0;">+<span id="LC555" class="line" lang="plaintext"> hts_verbose@Base 1.10</span>
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556
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<pre style="margin: 0;">+<span id="LC556" class="line" lang="plaintext"> hts_version@Base 1.10</span>
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557
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<pre style="margin: 0;">+<span id="LC557" class="line" lang="plaintext"> hwrite2@Base 1.10</span>
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558
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<pre style="margin: 0;">+<span id="LC558" class="line" lang="plaintext"> int32_get_blk@Base 1.10</span>
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559
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<pre style="margin: 0;">+<span id="LC559" class="line" lang="plaintext"> int32_put_blk@Base 1.10</span>
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560
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<pre style="margin: 0;">+<span id="LC560" class="line" lang="plaintext"> itf8_bytes@Base 1.10</span>
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561
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<pre style="margin: 0;">+<span id="LC561" class="line" lang="plaintext"> itf8_decode@Base 1.10</span>
</pre>
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562
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<pre style="margin: 0;">+<span id="LC562" class="line" lang="plaintext"> itf8_decode_crc@Base 1.10</span>
</pre>
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563
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<pre style="margin: 0;">+<span id="LC563" class="line" lang="plaintext"> itf8_encode@Base 1.10</span>
</pre>
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564
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<pre style="margin: 0;">+<span id="LC564" class="line" lang="plaintext"> itf8_put_blk@Base 1.10</span>
</pre>
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565
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<pre style="margin: 0;">+<span id="LC565" class="line" lang="plaintext"> kf_betai@Base 1.10</span>
</pre>
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566
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<pre style="margin: 0;">+<span id="LC566" class="line" lang="plaintext"> kf_erfc@Base 1.10</span>
</pre>
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567
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<pre style="margin: 0;">+<span id="LC567" class="line" lang="plaintext"> kf_gammap@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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568
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<pre style="margin: 0;">+<span id="LC568" class="line" lang="plaintext"> kf_gammaq@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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569
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<pre style="margin: 0;">+<span id="LC569" class="line" lang="plaintext"> kf_lgamma@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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570
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<pre style="margin: 0;">+<span id="LC570" class="line" lang="plaintext"> kftp_connect@Base 1.10</span>
</pre>
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571
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<pre style="margin: 0;">+<span id="LC571" class="line" lang="plaintext"> kftp_connect_file@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="572" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
572
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<pre style="margin: 0;">+<span id="LC572" class="line" lang="plaintext"> kftp_parse_url@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="573" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
573
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<pre style="margin: 0;">+<span id="LC573" class="line" lang="plaintext"> kftp_reconnect@Base 1.10</span>
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<td class="diff-line-num new new_line" data-linenumber="574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
574
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<pre style="margin: 0;">+<span id="LC574" class="line" lang="plaintext"> kgetline2@Base 1.10</span>
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<td class="diff-line-num new new_line" data-linenumber="575" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
575
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<pre style="margin: 0;">+<span id="LC575" class="line" lang="plaintext"> kgetline@Base 1.10</span>
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<td class="diff-line-num new new_line" data-linenumber="576" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
576
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<pre style="margin: 0;">+<span id="LC576" class="line" lang="plaintext"> khttp_connect_file@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
577
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<pre style="margin: 0;">+<span id="LC577" class="line" lang="plaintext"> khttp_parse_url@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="578" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
578
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<pre style="margin: 0;">+<span id="LC578" class="line" lang="plaintext"> kmemmem@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="579" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
579
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<pre style="margin: 0;">+<span id="LC579" class="line" lang="plaintext"> knet_close@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="580" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
580
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<pre style="margin: 0;">+<span id="LC580" class="line" lang="plaintext"> knet_dopen@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="581" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
581
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<pre style="margin: 0;">+<span id="LC581" class="line" lang="plaintext"> knet_open@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="582" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
582
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<pre style="margin: 0;">+<span id="LC582" class="line" lang="plaintext"> knet_read@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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583
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<pre style="margin: 0;">+<span id="LC583" class="line" lang="plaintext"> knet_seek@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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584
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<pre style="margin: 0;">+<span id="LC584" class="line" lang="plaintext"> kputd@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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585
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<pre style="margin: 0;">+<span id="LC585" class="line" lang="plaintext"> ksplit_core@Base 1.10</span>
</pre>
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586
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<pre style="margin: 0;">+<span id="LC586" class="line" lang="plaintext"> ksprintf@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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587
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<pre style="margin: 0;">+<span id="LC587" class="line" lang="plaintext"> kstrnstr@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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588
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<pre style="margin: 0;">+<span id="LC588" class="line" lang="plaintext"> kstrstr@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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589
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<pre style="margin: 0;">+<span id="LC589" class="line" lang="plaintext"> kstrtok@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="590" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
590
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<pre style="margin: 0;">+<span id="LC590" class="line" lang="plaintext"> kt_fisher_exact@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="591" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
591
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<pre style="margin: 0;">+<span id="LC591" class="line" lang="plaintext"> kvsprintf@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="592" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
592
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC592" class="line" lang="plaintext"> ltf8_bytes@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="593" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
593
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC593" class="line" lang="plaintext"> ltf8_decode@Base 1.10</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="594" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
594
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC594" class="line" lang="plaintext"> ltf8_decode_crc@Base 1.10</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="595" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
595
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC595" class="line" lang="plaintext"> ltf8_put_blk@Base 1.10</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="596" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
596
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC596" class="line" lang="plaintext"> mfascii@Base 1.10</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="597" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
597
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<pre style="margin: 0;">+<span id="LC597" class="line" lang="plaintext"> mfclose@Base 1.10</span>
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<td class="diff-line-num new new_line" data-linenumber="598" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
598
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<pre style="margin: 0;">+<span id="LC598" class="line" lang="plaintext"> mfcreate@Base 1.10</span>
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599
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<pre style="margin: 0;">+<span id="LC599" class="line" lang="plaintext"> mfcreate_from@Base 1.10</span>
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600
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<pre style="margin: 0;">+<span id="LC600" class="line" lang="plaintext"> mfdestroy@Base 1.10</span>
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601
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<pre style="margin: 0;">+<span id="LC601" class="line" lang="plaintext"> mfdetach@Base 1.10</span>
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602
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<pre style="margin: 0;">+<span id="LC602" class="line" lang="plaintext"> mfeof@Base 1.10</span>
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<td class="diff-line-num new new_line" data-linenumber="603" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
603
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<pre style="margin: 0;">+<span id="LC603" class="line" lang="plaintext"> mfflush@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="604" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
604
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<pre style="margin: 0;">+<span id="LC604" class="line" lang="plaintext"> mfgetc@Base 1.10</span>
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605
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<pre style="margin: 0;">+<span id="LC605" class="line" lang="plaintext"> mfgets@Base 1.10</span>
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606
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<pre style="margin: 0;">+<span id="LC606" class="line" lang="plaintext"> mfmmap@Base 1.10</span>
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607
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<pre style="margin: 0;">+<span id="LC607" class="line" lang="plaintext"> mfopen@Base 1.10</span>
</pre>
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608
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<pre style="margin: 0;">+<span id="LC608" class="line" lang="plaintext"> mfread@Base 1.10</span>
</pre>
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609
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<pre style="margin: 0;">+<span id="LC609" class="line" lang="plaintext"> mfrecreate@Base 1.10</span>
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610
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<pre style="margin: 0;">+<span id="LC610" class="line" lang="plaintext"> mfreopen@Base 1.10</span>
</pre>
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611
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<pre style="margin: 0;">+<span id="LC611" class="line" lang="plaintext"> mfseek@Base 1.10</span>
</pre>
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612
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<pre style="margin: 0;">+<span id="LC612" class="line" lang="plaintext"> mfsteal@Base 1.10</span>
</pre>
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613
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<pre style="margin: 0;">+<span id="LC613" class="line" lang="plaintext"> mftell@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="614" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
614
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<pre style="margin: 0;">+<span id="LC614" class="line" lang="plaintext"> mftruncate@Base 1.10</span>
</pre>
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615
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<pre style="margin: 0;">+<span id="LC615" class="line" lang="plaintext"> mfwrite@Base 1.10</span>
</pre>
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616
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<pre style="margin: 0;">+<span id="LC616" class="line" lang="plaintext"> mrewind@Base 1.10</span>
</pre>
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617
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<pre style="margin: 0;">+<span id="LC617" class="line" lang="plaintext"> mstderr@Base 1.10</span>
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<td class="diff-line-num new new_line" data-linenumber="618" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
618
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<pre style="margin: 0;">+<span id="LC618" class="line" lang="plaintext"> mstdin@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="619" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
619
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<pre style="margin: 0;">+<span id="LC619" class="line" lang="plaintext"> mstdout@Base 1.10</span>
</pre>
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620
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<pre style="margin: 0;">+<span id="LC620" class="line" lang="plaintext"> mungetc@Base 1.10</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
621
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<pre style="margin: 0;">+<span id="LC621" class="line" lang="plaintext"> open_path_mfile@Base 1.10</span>
</pre>
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622
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<pre style="margin: 0;">+<span id="LC622" class="line" lang="plaintext"> pool_alloc@Base 1.10</span>
</pre>
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623
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<pre style="margin: 0;">+<span id="LC623" class="line" lang="plaintext"> pool_create@Base 1.10</span>
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624
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<pre style="margin: 0;">+<span id="LC624" class="line" lang="plaintext"> pool_destroy@Base 1.10</span>
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625
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<pre style="margin: 0;">+<span id="LC625" class="line" lang="plaintext"> pool_free@Base 1.10</span>
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626
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<pre style="margin: 0;">+<span id="LC626" class="line" lang="plaintext"> probaln_glocal@Base 1.10</span>
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627
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<pre style="margin: 0;">+<span id="LC627" class="line" lang="plaintext"> rans_compress@Base 1.10</span>
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628
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<pre style="margin: 0;">+<span id="LC628" class="line" lang="plaintext"> rans_compress_O0@Base 1.10</span>
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629
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<pre style="margin: 0;">+<span id="LC629" class="line" lang="plaintext"> rans_compress_O1@Base 1.10</span>
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630
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<pre style="margin: 0;">+<span id="LC630" class="line" lang="plaintext"> rans_uncompress@Base 1.10</span>
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631
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<pre style="margin: 0;">+<span id="LC631" class="line" lang="plaintext"> rans_uncompress_O0@Base 1.10</span>
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632
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<pre style="margin: 0;">+<span id="LC632" class="line" lang="plaintext"> rans_uncompress_O1@Base 1.10</span>
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633
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<pre style="margin: 0;">+<span id="LC633" class="line" lang="plaintext"> refs2id@Base 1.10</span>
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634
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<pre style="margin: 0;">+<span id="LC634" class="line" lang="plaintext"> refs_free@Base 1.10</span>
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635
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<pre style="margin: 0;">+<span id="LC635" class="line" lang="plaintext"> regidx_destroy@Base 1.10</span>
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636
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<pre style="margin: 0;">+<span id="LC636" class="line" lang="plaintext"> regidx_init@Base 1.10</span>
</pre>
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637
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<pre style="margin: 0;">+<span id="LC637" class="line" lang="plaintext"> regidx_init_string@Base 1.10</span>
</pre>
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638
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<pre style="margin: 0;">+<span id="LC638" class="line" lang="plaintext"> regidx_insert@Base 1.10</span>
</pre>
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639
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<pre style="margin: 0;">+<span id="LC639" class="line" lang="plaintext"> regidx_insert_list@Base 1.10</span>
</pre>
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640
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<pre style="margin: 0;">+<span id="LC640" class="line" lang="plaintext"> regidx_nregs@Base 1.10</span>
</pre>
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641
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<pre style="margin: 0;">+<span id="LC641" class="line" lang="plaintext"> regidx_overlap@Base 1.10</span>
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642
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<pre style="margin: 0;">+<span id="LC642" class="line" lang="plaintext"> regidx_parse_bed@Base 1.10</span>
</pre>
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643
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<pre style="margin: 0;">+<span id="LC643" class="line" lang="plaintext"> regidx_parse_reg@Base 1.10</span>
</pre>
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644
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<pre style="margin: 0;">+<span id="LC644" class="line" lang="plaintext"> regidx_parse_tab@Base 1.10</span>
</pre>
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645
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<pre style="margin: 0;">+<span id="LC645" class="line" lang="plaintext"> regidx_parse_vcf@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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646
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<pre style="margin: 0;">+<span id="LC646" class="line" lang="plaintext"> regidx_push@Base 1.10</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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647
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<pre style="margin: 0;">+<span id="LC647" class="line" lang="plaintext"> regidx_seq_names@Base 1.10</span>
</pre>
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648
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<pre style="margin: 0;">+<span id="LC648" class="line" lang="plaintext"> regidx_seq_nregs@Base 1.10</span>
</pre>
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649
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<pre style="margin: 0;">+<span id="LC649" class="line" lang="plaintext"> regitr_copy@Base 1.10</span>
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650
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<pre style="margin: 0;">+<span id="LC650" class="line" lang="plaintext"> regitr_destroy@Base 1.10</span>
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651
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<pre style="margin: 0;">+<span id="LC651" class="line" lang="plaintext"> regitr_init@Base 1.10</span>
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652
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<pre style="margin: 0;">+<span id="LC652" class="line" lang="plaintext"> regitr_loop@Base 1.10</span>
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653
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<pre style="margin: 0;">+<span id="LC653" class="line" lang="plaintext"> regitr_overlap@Base 1.10</span>
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654
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<pre style="margin: 0;">+<span id="LC654" class="line" lang="plaintext"> regitr_reset@Base 1.10</span>
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655
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<pre style="margin: 0;">+<span id="LC655" class="line" lang="plaintext"> sam_cap_mapq@Base 1.10</span>
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656
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<pre style="margin: 0;">+<span id="LC656" class="line" lang="plaintext"> sam_format1@Base 1.10</span>
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657
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<pre style="margin: 0;">+<span id="LC657" class="line" lang="plaintext"> sam_hdr_add_line@Base 1.10</span>
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658
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<pre style="margin: 0;">+<span id="LC658" class="line" lang="plaintext"> sam_hdr_add_lines@Base 1.10</span>
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659
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<pre style="margin: 0;">+<span id="LC659" class="line" lang="plaintext"> sam_hdr_add_pg@Base 1.10</span>
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660
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<pre style="margin: 0;">+<span id="LC660" class="line" lang="plaintext"> sam_hdr_change_HD@Base 1.10</span>
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661
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<pre style="margin: 0;">+<span id="LC661" class="line" lang="plaintext"> sam_hdr_count_lines@Base 1.10</span>
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662
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<pre style="margin: 0;">+<span id="LC662" class="line" lang="plaintext"> sam_hdr_destroy@Base 1.10</span>
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663
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<pre style="margin: 0;">+<span id="LC663" class="line" lang="plaintext"> sam_hdr_dup@Base 1.10</span>
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664
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<pre style="margin: 0;">+<span id="LC664" class="line" lang="plaintext"> sam_hdr_dup_sdict@Base 1.10</span>
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665
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<pre style="margin: 0;">+<span id="LC665" class="line" lang="plaintext"> sam_hdr_fill_hrecs@Base 1.10</span>
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666
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<pre style="margin: 0;">+<span id="LC666" class="line" lang="plaintext"> sam_hdr_find_line_id@Base 1.10</span>
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667
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<pre style="margin: 0;">+<span id="LC667" class="line" lang="plaintext"> sam_hdr_find_line_pos@Base 1.10</span>
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668
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<pre style="margin: 0;">+<span id="LC668" class="line" lang="plaintext"> sam_hdr_find_tag_id@Base 1.10</span>
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669
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<pre style="margin: 0;">+<span id="LC669" class="line" lang="plaintext"> sam_hdr_find_tag_pos@Base 1.10</span>
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670
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<pre style="margin: 0;">+<span id="LC670" class="line" lang="plaintext"> sam_hdr_incr_ref@Base 1.10</span>
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671
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<pre style="margin: 0;">+<span id="LC671" class="line" lang="plaintext"> sam_hdr_init@Base 1.10</span>
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672
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<pre style="margin: 0;">+<span id="LC672" class="line" lang="plaintext"> sam_hdr_length@Base 1.10</span>
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673
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<pre style="margin: 0;">+<span id="LC673" class="line" lang="plaintext"> sam_hdr_line_index@Base 1.10</span>
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674
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<pre style="margin: 0;">+<span id="LC674" class="line" lang="plaintext"> sam_hdr_line_name@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC675" class="line" lang="plaintext"> sam_hdr_name2tid@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC676" class="line" lang="plaintext"> sam_hdr_nref@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC677" class="line" lang="plaintext"> sam_hdr_parse@Base 1.10</span>
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678
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<pre style="margin: 0;">+<span id="LC678" class="line" lang="plaintext"> sam_hdr_pg_id@Base 1.10</span>
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679
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<pre style="margin: 0;">+<span id="LC679" class="line" lang="plaintext"> sam_hdr_read@Base 1.10</span>
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680
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<pre style="margin: 0;">+<span id="LC680" class="line" lang="plaintext"> sam_hdr_rebuild@Base 1.10</span>
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681
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<pre style="margin: 0;">+<span id="LC681" class="line" lang="plaintext"> sam_hdr_remove_except@Base 1.10</span>
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682
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<pre style="margin: 0;">+<span id="LC682" class="line" lang="plaintext"> sam_hdr_remove_line_id@Base 1.10</span>
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683
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<pre style="margin: 0;">+<span id="LC683" class="line" lang="plaintext"> sam_hdr_remove_line_pos@Base 1.10</span>
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684
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<pre style="margin: 0;">+<span id="LC684" class="line" lang="plaintext"> sam_hdr_remove_lines@Base 1.10</span>
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685
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<pre style="margin: 0;">+<span id="LC685" class="line" lang="plaintext"> sam_hdr_remove_tag_id@Base 1.10</span>
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686
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<pre style="margin: 0;">+<span id="LC686" class="line" lang="plaintext"> sam_hdr_str@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC687" class="line" lang="plaintext"> sam_hdr_tid2len@Base 1.10</span>
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688
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<pre style="margin: 0;">+<span id="LC688" class="line" lang="plaintext"> sam_hdr_tid2name@Base 1.10</span>
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689
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<pre style="margin: 0;">+<span id="LC689" class="line" lang="plaintext"> sam_hdr_update_line@Base 1.10</span>
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690
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<pre style="margin: 0;">+<span id="LC690" class="line" lang="plaintext"> sam_hdr_update_target_arrays@Base 1.10</span>
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691
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<pre style="margin: 0;">+<span id="LC691" class="line" lang="plaintext"> sam_hdr_write@Base 1.10</span>
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692
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<pre style="margin: 0;">+<span id="LC692" class="line" lang="plaintext"> sam_hrecs_find_key@Base 1.10</span>
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693
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<pre style="margin: 0;">+<span id="LC693" class="line" lang="plaintext"> sam_hrecs_find_rg@Base 1.10</span>
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694
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<pre style="margin: 0;">+<span id="LC694" class="line" lang="plaintext"> sam_hrecs_find_type_id@Base 1.10</span>
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695
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<pre style="margin: 0;">+<span id="LC695" class="line" lang="plaintext"> sam_hrecs_free@Base 1.10</span>
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696
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<pre style="margin: 0;">+<span id="LC696" class="line" lang="plaintext"> sam_hrecs_group_order@Base 1.10</span>
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697
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<pre style="margin: 0;">+<span id="LC697" class="line" lang="plaintext"> sam_hrecs_new@Base 1.10</span>
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698
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<pre style="margin: 0;">+<span id="LC698" class="line" lang="plaintext"> sam_hrecs_rebuild_text@Base 1.10</span>
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699
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<pre style="margin: 0;">+<span id="LC699" class="line" lang="plaintext"> sam_hrecs_remove_key@Base 1.10</span>
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700
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<pre style="margin: 0;">+<span id="LC700" class="line" lang="plaintext"> sam_hrecs_sort_order@Base 1.10</span>
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701
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<pre style="margin: 0;">+<span id="LC701" class="line" lang="plaintext"> sam_idx_init@Base 1.10</span>
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702
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<pre style="margin: 0;">+<span id="LC702" class="line" lang="plaintext"> sam_idx_save@Base 1.10</span>
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703
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<pre style="margin: 0;">+<span id="LC703" class="line" lang="plaintext"> sam_index_build2@Base 1.10</span>
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704
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<pre style="margin: 0;">+<span id="LC704" class="line" lang="plaintext"> sam_index_build3@Base 1.10</span>
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705
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<pre style="margin: 0;">+<span id="LC705" class="line" lang="plaintext"> sam_index_build@Base 1.10</span>
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706
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<pre style="margin: 0;">+<span id="LC706" class="line" lang="plaintext"> sam_index_load2@Base 1.10</span>
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707
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<pre style="margin: 0;">+<span id="LC707" class="line" lang="plaintext"> sam_index_load3@Base 1.10</span>
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708
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<pre style="margin: 0;">+<span id="LC708" class="line" lang="plaintext"> sam_index_load@Base 1.10</span>
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709
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<pre style="margin: 0;">+<span id="LC709" class="line" lang="plaintext"> sam_itr_queryi@Base 1.10</span>
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710
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<pre style="margin: 0;">+<span id="LC710" class="line" lang="plaintext"> sam_itr_querys@Base 1.10</span>
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711
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<pre style="margin: 0;">+<span id="LC711" class="line" lang="plaintext"> sam_itr_regarray@Base 1.10</span>
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712
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<pre style="margin: 0;">+<span id="LC712" class="line" lang="plaintext"> sam_itr_regions@Base 1.10</span>
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713
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<pre style="margin: 0;">+<span id="LC713" class="line" lang="plaintext"> sam_open_mode@Base 1.10</span>
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714
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<pre style="margin: 0;">+<span id="LC714" class="line" lang="plaintext"> sam_open_mode_opts@Base 1.10</span>
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715
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<pre style="margin: 0;">+<span id="LC715" class="line" lang="plaintext"> sam_parse1@Base 1.10</span>
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716
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<pre style="margin: 0;">+<span id="LC716" class="line" lang="plaintext"> sam_parse_region@Base 1.10</span>
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717
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<pre style="margin: 0;">+<span id="LC717" class="line" lang="plaintext"> sam_prob_realn@Base 1.10</span>
</pre>
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718
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<pre style="margin: 0;">+<span id="LC718" class="line" lang="plaintext"> sam_read1@Base 1.10</span>
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719
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<pre style="margin: 0;">+<span id="LC719" class="line" lang="plaintext"> sam_realloc_bam_data@Base 1.10</span>
</pre>
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720
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<pre style="margin: 0;">+<span id="LC720" class="line" lang="plaintext"> sam_set_thread_pool@Base 1.10</span>
</pre>
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721
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<pre style="margin: 0;">+<span id="LC721" class="line" lang="plaintext"> sam_set_threads@Base 1.10</span>
</pre>
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722
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<pre style="margin: 0;">+<span id="LC722" class="line" lang="plaintext"> sam_state_destroy@Base 1.10</span>
</pre>
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723
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<pre style="margin: 0;">+<span id="LC723" class="line" lang="plaintext"> sam_write1@Base 1.10</span>
</pre>
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724
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<pre style="margin: 0;">+<span id="LC724" class="line" lang="plaintext"> seq_nt16_int@Base 1.10</span>
</pre>
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725
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<pre style="margin: 0;">+<span id="LC725" class="line" lang="plaintext"> seq_nt16_str@Base 1.10</span>
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726
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<pre style="margin: 0;">+<span id="LC726" class="line" lang="plaintext"> seq_nt16_table@Base 1.10</span>
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727
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<pre style="margin: 0;">+<span id="LC727" class="line" lang="plaintext"> string_alloc@Base 1.10</span>
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728
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<pre style="margin: 0;">+<span id="LC728" class="line" lang="plaintext"> string_dup@Base 1.10</span>
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729
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<pre style="margin: 0;">+<span id="LC729" class="line" lang="plaintext"> string_ndup@Base 1.10</span>
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730
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<pre style="margin: 0;">+<span id="LC730" class="line" lang="plaintext"> string_pool_create@Base 1.10</span>
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731
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<pre style="margin: 0;">+<span id="LC731" class="line" lang="plaintext"> string_pool_destroy@Base 1.10</span>
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732
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<pre style="margin: 0;">+<span id="LC732" class="line" lang="plaintext"> stringify_argv@Base 1.10</span>
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<td class="diff-line-num new new_line" data-linenumber="733" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
733
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<pre style="margin: 0;">+<span id="LC733" class="line" lang="plaintext"> tbx_conf_bed@Base 1.10</span>
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734
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<pre style="margin: 0;">+<span id="LC734" class="line" lang="plaintext"> tbx_conf_gff@Base 1.10</span>
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735
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<pre style="margin: 0;">+<span id="LC735" class="line" lang="plaintext"> tbx_conf_psltbl@Base 1.10</span>
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736
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<pre style="margin: 0;">+<span id="LC736" class="line" lang="plaintext"> tbx_conf_sam@Base 1.10</span>
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737
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<pre style="margin: 0;">+<span id="LC737" class="line" lang="plaintext"> tbx_conf_vcf@Base 1.10</span>
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738
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<pre style="margin: 0;">+<span id="LC738" class="line" lang="plaintext"> tbx_destroy@Base 1.10</span>
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739
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<pre style="margin: 0;">+<span id="LC739" class="line" lang="plaintext"> tbx_index@Base 1.10</span>
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740
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<pre style="margin: 0;">+<span id="LC740" class="line" lang="plaintext"> tbx_index_build2@Base 1.10</span>
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741
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<pre style="margin: 0;">+<span id="LC741" class="line" lang="plaintext"> tbx_index_build3@Base 1.10</span>
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742
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<pre style="margin: 0;">+<span id="LC742" class="line" lang="plaintext"> tbx_index_build@Base 1.10</span>
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743
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<pre style="margin: 0;">+<span id="LC743" class="line" lang="plaintext"> tbx_index_load2@Base 1.10</span>
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744
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<pre style="margin: 0;">+<span id="LC744" class="line" lang="plaintext"> tbx_index_load3@Base 1.10</span>
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745
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<pre style="margin: 0;">+<span id="LC745" class="line" lang="plaintext"> tbx_index_load@Base 1.10</span>
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746
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<pre style="margin: 0;">+<span id="LC746" class="line" lang="plaintext"> tbx_name2id@Base 1.10</span>
</pre>
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747
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<pre style="margin: 0;">+<span id="LC747" class="line" lang="plaintext"> tbx_parse1@Base 1.10</span>
</pre>
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748
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<pre style="margin: 0;">+<span id="LC748" class="line" lang="plaintext"> tbx_readrec@Base 1.10</span>
</pre>
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749
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<pre style="margin: 0;">+<span id="LC749" class="line" lang="plaintext"> tbx_seqnames@Base 1.10</span>
</pre>
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750
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<pre style="margin: 0;">+<span id="LC750" class="line" lang="plaintext"> tokenise_search_path@Base 1.10</span>
</pre>
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<pre style="margin: 0;">+<span id="LC751" class="line" lang="plaintext"> vcf_format@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC752" class="line" lang="plaintext"> vcf_hdr_read@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC753" class="line" lang="plaintext"> vcf_hdr_write@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC754" class="line" lang="plaintext"> vcf_parse@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC755" class="line" lang="plaintext"> vcf_read@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC756" class="line" lang="plaintext"> vcf_write@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC757" class="line" lang="plaintext"> vcf_write_line@Base 1.10</span>
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<pre style="margin: 0;">+<span id="LC758" class="line" lang="plaintext"> zlib_mem_inflate@Base 1.10</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/htslib/compare/bc910b7a1257cc17df26465f9d00eb0d3e92bc80...52415fa2e6ac93725e7c2edfe3d307011a3f8ee2#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -27,7 +27,7 @@ endif</td>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> autoconf</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> dh_auto_configure -- --enable-libcurl --enable-gcs --enable-s3</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">override_dh_auto_build<span class="idiff left right">-arch</span>:</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> dh_auto_build -- \</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> CFLAGS="$$(dpkg-buildflags --get CFLAGS)" \</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> CPPFLAGS="-I. -DSAMTOOLS=1 $$(dpkg-buildflags --get CPPFLAGS)" \</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,7 +36,9 @@ override_dh_auto_build:</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> libdir=/usr/lib/$(DEB_HOST_MULTIARCH)</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"># re-try later LDLIBS=-lhts \</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext">override_dh_auto_install:</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext">override_dh_auto_build-indep:</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">override_dh_auto_install-arch:</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> rm $(CURDIR)/test/$${binary} ; \</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> done</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -46,12 +48,14 @@ override_dh_auto_install:</td>
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48
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> $(RM) -r test</span>
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47
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> mv test_backup test</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext">override_dh_install:</span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> dh_install</span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext">ifeq (,$(wildcard ./debian/htslib-test/usr/share/htslib-test/config.mk))</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext">override_dh_auto_install-indep:</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext">override_dh_auto_test-indep:</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext">override_dh_install-indep:</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> dh_install --indep</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> sed -i 's/-ffile-prefix-map=[^[:space:]]* //g' debian/htslib-test/usr/share/htslib-test/config.mk</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> sed -i 's/-fdebug-prefix-map=[^[:space:]]* //g' debian/htslib-test/usr/share/htslib-test/config.mk</span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext">override_dh_installchangelogs:</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> dh_installchangelogs NEWS</span>
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