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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/librcsb-core-wrapper">Debian Med / librcsb-core-wrapper</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/librcsb-core-wrapper/commit/47d0bd8c01b1d322778f66c112087b40624910b2">47d0bd8c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-12-14T17:19:29Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">use pybuild
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/librcsb-core-wrapper/commit/225e8a12d6891db989af3bc25882ab74fd0f40a3">225e8a12</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-12-14T20:42:08Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">PARTIAL FIX: improve py3 compat
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#e246f69e945a7c2e9a8e25cfacfcac7714c92b69">
debian/patches/python3.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="e246f69e945a7c2e9a8e25cfacfcac7714c92b69">
<a href="https://salsa.debian.org/med-team/librcsb-core-wrapper/compare/a045d67df6ff97a8a64a15626530ce05e3798e99...225e8a12d6891db989af3bc25882ab74fd0f40a3#e246f69e945a7c2e9a8e25cfacfcac7714c92b69"><strong>debian/patches/python3.patch</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- <span class="idiff left right">a</span>/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ <span class="idiff left right">b</span>/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">@@ -59,9 +59,9 @@</span><span class="idiff left right"> compile_osx:</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- <span class="idiff left right">librcsb-core-wrapper.orig</span>/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ <span class="idiff left right">librcsb-core-wrapper</span>/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">@@ -59,9 +59,9 @@</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"> compile_lnx_38:</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"> @sh -c 'cd ./$(UTIL_MODULE); \</span>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> export PIC=-fPIC; \</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,7 +12,7 @@</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> export WWPDB_BOOST_INC=/apps/boost_1_38_0/include/boost-1_38; \</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> export WWPDB_BOOST_PYTHON_LIB_DIR=/apps/boost_1_38_0/lib; \</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"> export WWPDB_BOOST_PYTHON_LIB=boost_python-gcc41-mt-1_38; \</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"><span class="p">@@ -73,9 +73,9 @@</span><span class="idiff left right"> compile_lnx_38:</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="p">@@ -73,9 +73,9 @@</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"> compile_lnx_41:</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"> @sh -c 'cd ./$(UTIL_MODULE); \</span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"> export PIC=-fPIC; \</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,7 +24,7 @@</td>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"> export WWPDB_BOOST_INC=/apps/boost/include/boost-1_41; \</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"> export WWPDB_BOOST_PYTHON_LIB_DIR=/apps/boost/lib; \</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"> export WWPDB_BOOST_PYTHON_LIB=boost_python-gcc41-mt-1_41; \</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff"><span class="p">@@ -88,9 +88,9 @@</span><span class="idiff left right"> compile_lnx_41:</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="p">@@ -88,9 +88,9 @@</span></span>
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28
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28
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="diff"> compile_wwpdb_py27:</span>
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29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"> @sh -c 'cd ./$(UTIL_MODULE); \</span>
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30
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30
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="diff"> export PIC=-fPIC; \</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,3 +36,24 @@</td>
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36
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36
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"> export WWPDB_BOOST_INC=$(TOP_INSTALL_DIR)/include; \</span>
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37
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="diff"> export WWPDB_BOOST_PYTHON_LIB_DIR=$(TOP_INSTALL_DIR)/lib; \</span>
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38
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38
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="diff"> export WWPDB_BOOST_PYTHON_LIB=boost_python-mt; \</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- librcsb-core-wrapper.orig/cctbx/scitbx/boost_python/container_conversions.h</span></span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ librcsb-core-wrapper/cctbx/scitbx/boost_python/container_conversions.h</span></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"><span class="p">@@ -150,13 +150,12 @@</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"> || PyTuple_Check(obj_ptr)</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"> || PyIter_Check(obj_ptr)</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"> || PyRange_Check(obj_ptr)</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- || ( !PyString_Check(obj_ptr)</span></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- && !PyUnicode_Check(obj_ptr)</span></span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- && ( obj_ptr->ob_type == 0</span></span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- || obj_ptr->ob_type->ob_type == 0</span></span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- || obj_ptr->ob_type->ob_type->tp_name == 0</span></span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ || ( !PyUnicode_Check(obj_ptr)</span></span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ && ( Py_TYPE(obj_ptr) == 0</span></span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ || Py_TYPE(Py_TYPE(obj_ptr)) == 0</span></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ || Py_TYPE(Py_TYPE(obj_ptr))->tp_name == 0</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"> || std::strcmp(</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- obj_ptr->ob_type->ob_type->tp_name,</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ Py_TYPE(Py_TYPE(obj_ptr))->tp_name,</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"> "Boost.Python.class") != 0)</span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"> && PyObject_HasAttrString(obj_ptr, "__len__")</span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"> && PyObject_HasAttrString(obj_ptr, "__getitem__")))) return 0;</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/librcsb-core-wrapper/compare/a045d67df6ff97a8a64a15626530ce05e3798e99...225e8a12d6891db989af3bc25882ab74fd0f40a3#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,7 +23,7 @@ override_dh_auto_build-nopy:</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> $(MAKE) doc</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">override_dh_auto_build-py: override_dh_auto_build-nopy</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> dh_auto_build --sourcedirectory=wrapper/python</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> dh_auto_build --sourcedirectory=wrapper/python<span class="idiff left right"> --buildsystem=pybuild</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">override_dh_auto_install: override_dh_auto_install-nopy override_dh_auto_install-py</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,7 +31,7 @@ override_dh_auto_install-nopy:</td>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> # lkajan: there is no real install mechanism in the upstream sources</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">override_dh_auto_install-py:</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> dh_auto_install --sourcedirectory=wrapper/python</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> dh_auto_install --sourcedirectory=wrapper/python<span class="idiff left right"> --buildsystem=pybuild</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext">override_dh_installdocs:</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> dh_installdocs</span>
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