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<h3>
Matthias Klumpp pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/sambamba">Debian Med / sambamba</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sambamba/commit/3b9a3a8ae0573f6b85135c448f68196021a2b63b">3b9a3a8a</a></strong>
<div>
<span>by Matthias Klumpp</span>
<i>at 2019-12-15T01:40:15Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.7.1</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
.gitmodules
</a>
</li>
<li class="file-stats">
<a href="#b2270542d41297db1ee0d12698e609ea3ec25ce7">
INSTALL.md
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</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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</li>
<li class="file-stats">
<a href="#544fe3dec8c6dbfa9ec37b21822a8554798b2423">
Makefile.guix
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</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#6f8a88f369eae9b2f3ece90d1ba6366a16f25f9c">
RELEASE-NOTES.md
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<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
<span class="new-file">
+
VERSION
</span>
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<li class="file-stats">
<a href="#112226490df6c43ac1d4d6f00c28297457264221">
cram/reader.d
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<li class="file-stats">
<a href="#e62432f0cd86983379047a8cc3071a54f3a3e8e8">
cram/reference.d
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<li class="file-stats">
<a href="#8291b4e34271f2e658f73706904f2f073f14b414">
cram/slicereader.d
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<li class="file-stats">
<a href="#b223d77580389f103c697116918394fb0fe4bb61">
cram/writer.d
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<li class="file-stats">
<a href="#7d096d615e9a5f94978a9f4dadcffa52fa06eb23">
doc/design.org
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<li class="file-stats">
<a href="#c8182d3068e7c60f52f0823e8be0b2d7aa02a5f0">
dub.json
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<li class="file-stats">
<a href="#da8c3529949805abe1b73685532823c3fb63b1a9">
run_tests.sh
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</li>
<li class="file-stats">
<a href="#a4a851f1a9b362eb349405d96d06dac3f93ee4d7">
sambamba/depth.d
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<li class="file-stats">
<a href="#c365df230597041ba3fddbfe582350c999494691">
sambamba/fixbins.d
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<li class="file-stats">
<a href="#ac099bc69d055fa991fea205cc9ac0a9aa464fab">
sambamba/flagstat.d
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<li class="file-stats">
<a href="#865a555a1661c9180932d77c7e2860441bbaef84">
sambamba/index.d
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<li class="file-stats">
<a href="#3b3ae0b610f6ae26ed107e183c7ee027e957b1ed">
sambamba/main.d
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<li class="file-stats">
<a href="#b888d326ed4b8a8c518a69a5de5f0ae9bc642ef9">
sambamba/markdup.d
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<li class="file-stats">
<a href="#9f2da6fdabbd5ca32a18c559c9b1bd8869ec535f">
sambamba/markdup2.d
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<li class="file-stats">
<a href="#f3e9a93cbfbe9312862beaf4bf5f3a05ac9f2466">
sambamba/merge.d
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<li class="file-stats">
<a href="#b5a32146659405cf1e2a8a45e9e3b9043c26a363">
sambamba/pileup.d
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<li class="file-stats">
<a href="#890918c431863986ba277b1828e33fc6c2cf21ef">
sambamba/slice.d
</a>
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<li class="file-stats">
<a href="#fafe746cd796043618d875c517f24ff0bd39c344">
sambamba/sort.d
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<li class="file-stats">
<a href="#7d9a0fa7558e07dc4b483ee3efc20abdb8441dda">
sambamba/subsample.d
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</li>
<li class="file-stats">
<a href="#ffc79391d1be46fcc2de06f9866315cecaa7d09a">
sambamba/utils/common/bed.d
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</li>
<li class="file-stats">
<a href="#1f20406248ed6fa292fe23e587cc00008b207647">
sambamba/utils/common/file.d
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</li>
<li class="file-stats">
<a href="#1c08dda9d3fc95dcabe5c858f92987ab5a9e6029">
sambamba/utils/common/filtering.d
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</li>
<li class="file-stats">
<a href="#6749e1e998cc114a899f9514e39f9e6c21bc6414">
sambamba/utils/common/readstorage.d
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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