<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/discosnp">Debian Med / discosnp</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/discosnp/commit/1371e07e962ecbfb59bba53436e19b3508458bf4">1371e07e</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-17T13:33:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/discosnp/commit/3b5f7697ac2ea943ecdaff5236a99eec7db85b58">3b5f7697</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-17T13:33:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/discosnp/commit/7cca372463f7b4d5bbfda71a4f40f0f9cc869ee5">7cca3724</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-17T13:33:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.4.2'
Update to upstream version '2.4.2'
with Debian dir 54d9cbf39f7432fe48fdf7cb47dc0b739fcd0366</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/discosnp/commit/a456a4995d238a315b70d846a0429416f6a7e3cf">a456a499</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-17T14:02:00Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adjusted patches to new upstream version
</pre>
</li>
</ul>
<h4>22 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#eaa3d84cb77d92a21b111fd1e37f53edc1ff9de0">
.DS_Store
</a>
</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
debian/patches/2to3.patch
</a>
</li>
<li class="file-stats">
<a href="#abfb1a54765fa4da90cfea86c619e421f0868366">
debian/patches/adapt_test_scripts.patch
</a>
</li>
<li class="file-stats">
<a href="#bf2967f2e5d775c66983431a1a3d3a2edf5b7227">
debian/patches/path_to_readme_file_names.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#45ae034d1d71b2d961abb7c91cf3d2f1a02a59c6">
debian/patches/spelling.patch
</a>
</li>
<li class="file-stats">
<a href="#cb5f0914b158384fc97934cc8fd6cba4e00b7d81">
<span class="new-file">
+
discoSnpRAD/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#2d703bba3f2486e5a5855a6fdc2f6c1e0d61ed3f">
<span class="new-file">
+
discoSnpRAD/clustering_scripts/discoRAD_clustering.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#c56603dd7f564b6f37ff1d2602e9b9b43c7a052e">
<span class="new-file">
+
discoSnpRAD/clustering_scripts/fasta_and_cluster_to_filtered_vcf.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#736f252c9a53d33e02d77054b969045b6579dca4">
<span class="new-file">
+
discoSnpRAD/clustering_scripts/from_SRC_to_edges.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#318aec0e52ac06c7d60ace19b8ebabf05f023259">
<span class="new-file">
+
discoSnpRAD/post-processing_scripts/1SNP_per_cluster.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#4e0c374e9e8a7b705db16ecab3df2f8be44256b1">
<span class="new-file">
+
discoSnpRAD/post-processing_scripts/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#7ec96d4ab0bcc23ce9f43263ae83ecbf4aa9de7e">
<span class="new-file">
+
discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#9add04fc4878a82903b46aad07ec1ca52dcaf8d6">
<span class="new-file">
+
discoSnpRAD/post-processing_scripts/filter_by_cluster_size_and_rank.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#9eada61e8805715425e2f2d539b3a6cb21f526cd">
scripts_RAD/filter_paralogs.py
→
discoSnpRAD/post-processing_scripts/filter_paralogs.py
</a>
</li>
<li class="file-stats">
<a href="#e5d13125f254534875d541d9443fe19b02440ddf">
scripts_RAD/filter_vcf_by_indiv_cov_and_max_missing.py
→
discoSnpRAD/post-processing_scripts/filter_vcf_by_indiv_cov_max_missing_and_maf.py
</a>
</li>
<li class="file-stats">
<a href="#e68bee9593a4abf2e90fdecc52f8d878290c3171">
<span class="new-file">
+
discoSnpRAD/post-processing_scripts/vcf2structure.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#db843ee1aa7e62bf45356464a94f6f15cd7fbc69">
<span class="new-file">
+
discoSnpRAD/run_discoSnpRad.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#23121249bf27c7ef52490e919e85c5dbebcffd20">
run_discoSnp++.sh
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #777;">
—
<br>
<a href="https://salsa.debian.org/med-team/discosnp/compare/6bb110cc6c70f806ae6ca33308789306ce62b63a...a456a4995d238a315b70d846a0429416f6a7e3cf">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>