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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/pbbam">Debian Med / pbbam</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/cec71ff4d268f6d9b65745b787bc0cc1190a0b35">cec71ff4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-13T20:50:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0.6+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#8ab4e94f59343a8b2d003b0b47d21fff1724bfd9">
bamboo_build.sh
</a>
</li>
<li class="file-stats">
<a href="#aded7756cdea7c289134466a0d54da4f26d43abb">
docs/source/conf.py
</a>
</li>
<li class="file-stats">
<a href="#feedf4d0444f717d7227468a9529c2cf9740b6fd">
include/meson.build
</a>
</li>
<li class="file-stats">
<a href="#0b230145bb13dc51db1e0e68ac2723313ee229a9">
include/pbbam/Accuracy.h
</a>
</li>
<li class="file-stats">
<a href="#97b03698cb36b558ef2b83306185f1493f428d44">
include/pbbam/AlignmentPrinter.h
</a>
</li>
<li class="file-stats">
<a href="#f747de5a3dc8c782bb99b25c9c7e5c8dfac85b5b">
<span class="new-file">
+
include/pbbam/BaiIndexCache.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#9b8e7465fdabd2180a1985fc676ea4cf29c95d7d">
include/pbbam/BaiIndexedBamReader.h
</a>
</li>
<li class="file-stats">
<a href="#e11de4080cabe1fe6fbdeab22b0f064fdbeab822">
include/pbbam/BamFile.h
</a>
</li>
<li class="file-stats">
<a href="#accf87f74fdd46233f3ca7733c793ca67088e74b">
include/pbbam/BamFileMerger.h
</a>
</li>
<li class="file-stats">
<a href="#460961253fa25e9fb04edd9d56917c4a055683d4">
include/pbbam/BamHeader.h
</a>
</li>
<li class="file-stats">
<a href="#3a425e9a92a7ed061a49ea98c687bb30cd748500">
include/pbbam/BamReader.h
</a>
</li>
<li class="file-stats">
<a href="#97939080c14fd57f90725f590b1094f8f0ee9f10">
include/pbbam/BamRecord.h
</a>
</li>
<li class="file-stats">
<a href="#967b12503062b54b346b15d4c2d01c6fdbcfbdef">
include/pbbam/BamRecordBuilder.h
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</li>
<li class="file-stats">
<a href="#6f0af9cd5ecfc522cf50a17f98ffea7c95f16624">
include/pbbam/BamRecordImpl.h
</a>
</li>
<li class="file-stats">
<a href="#158e05e89acca4473ffa89f3fc109a051188ae4c">
include/pbbam/BamRecordTag.h
</a>
</li>
<li class="file-stats">
<a href="#b96a662b54ae36b7eea4f8ddbc5f90133ff94dff">
include/pbbam/BamRecordView.h
</a>
</li>
<li class="file-stats">
<a href="#941c981d5e65eb46de63f4968a345c5aa46c0385">
include/pbbam/BamTagCodec.h
</a>
</li>
<li class="file-stats">
<a href="#213872121f6ad280d08d4b11948914a21bd57a4d">
include/pbbam/BamWriter.h
</a>
</li>
<li class="file-stats">
<a href="#e1b542abeac5a2c2d91a7b9d55d1dc44d279e9fc">
include/pbbam/BarcodeQuery.h
</a>
</li>
<li class="file-stats">
<a href="#c3773cf4ce11c824ff8165babb6ff3473e82ca26">
<span class="new-file">
+
include/pbbam/BgzipFastaWriter.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#0b854c9ccc18c4f49e367dcbf0d728fbf4b18681">
<span class="new-file">
+
include/pbbam/BgzipFastqWriter.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#58fb4fa6bc7912b402b9d77baad75a3a792dfdb4">
<span class="new-file">
+
include/pbbam/BgzipWriter.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#d0cddba547d6512eef96021d550c8018285b3c44">
include/pbbam/Cigar.h
</a>
</li>
<li class="file-stats">
<a href="#982c4f6ff634e1c39fba108b42047dcb77486750">
include/pbbam/CigarOperation.h
</a>
</li>
<li class="file-stats">
<a href="#57d514d37b657cb060a75461a571a69591a58cab">
include/pbbam/ClipType.h
</a>
</li>
<li class="file-stats">
<a href="#e05d4ab227d906896bf3f3542deee449cb8bf6b1">
include/pbbam/Compare.h
</a>
</li>
<li class="file-stats">
<a href="#180b1c98d5315b40042488cfb6dc31f5165a5ea1">
include/pbbam/CompositeBamReader.h
</a>
</li>
<li class="file-stats">
<a href="#90781bf24baef6a77f5133c13c5e7df3a60dbdc0">
include/pbbam/CompositeFastaReader.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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