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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/discosnp">Debian Med / discosnp</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/discosnp/commit/1371e07e962ecbfb59bba53436e19b3508458bf4">1371e07e</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-12-17T13:33:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.2</pre>
</li>
</ul>
<h4>17 changed files:</h4>
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<li class="file-stats">
<a href="#eaa3d84cb77d92a21b111fd1e37f53edc1ff9de0">
.DS_Store
</a>
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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</li>
<li class="file-stats">
<a href="#cb5f0914b158384fc97934cc8fd6cba4e00b7d81">
<span class="new-file">
+
discoSnpRAD/README.md
</span>
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<li class="file-stats">
<a href="#2d703bba3f2486e5a5855a6fdc2f6c1e0d61ed3f">
<span class="new-file">
+
discoSnpRAD/clustering_scripts/discoRAD_clustering.sh
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<li class="file-stats">
<a href="#c56603dd7f564b6f37ff1d2602e9b9b43c7a052e">
<span class="new-file">
+
discoSnpRAD/clustering_scripts/fasta_and_cluster_to_filtered_vcf.py
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</a>
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<li class="file-stats">
<a href="#736f252c9a53d33e02d77054b969045b6579dca4">
<span class="new-file">
+
discoSnpRAD/clustering_scripts/from_SRC_to_edges.py
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</a>
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<li class="file-stats">
<a href="#318aec0e52ac06c7d60ace19b8ebabf05f023259">
<span class="new-file">
+
discoSnpRAD/post-processing_scripts/1SNP_per_cluster.py
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<li class="file-stats">
<a href="#4e0c374e9e8a7b705db16ecab3df2f8be44256b1">
<span class="new-file">
+
discoSnpRAD/post-processing_scripts/README.md
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<li class="file-stats">
<a href="#7ec96d4ab0bcc23ce9f43263ae83ecbf4aa9de7e">
<span class="new-file">
+
discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py
</span>
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<li class="file-stats">
<a href="#9add04fc4878a82903b46aad07ec1ca52dcaf8d6">
<span class="new-file">
+
discoSnpRAD/post-processing_scripts/filter_by_cluster_size_and_rank.py
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<li class="file-stats">
<a href="#9eada61e8805715425e2f2d539b3a6cb21f526cd">
scripts_RAD/filter_paralogs.py
→
discoSnpRAD/post-processing_scripts/filter_paralogs.py
</a>
</li>
<li class="file-stats">
<a href="#e5d13125f254534875d541d9443fe19b02440ddf">
scripts_RAD/filter_vcf_by_indiv_cov_and_max_missing.py
→
discoSnpRAD/post-processing_scripts/filter_vcf_by_indiv_cov_max_missing_and_maf.py
</a>
</li>
<li class="file-stats">
<a href="#e68bee9593a4abf2e90fdecc52f8d878290c3171">
<span class="new-file">
+
discoSnpRAD/post-processing_scripts/vcf2structure.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#db843ee1aa7e62bf45356464a94f6f15cd7fbc69">
<span class="new-file">
+
discoSnpRAD/run_discoSnpRad.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#23121249bf27c7ef52490e919e85c5dbebcffd20">
run_discoSnp++.sh
</a>
</li>
<li class="file-stats">
<a href="#c66012cb278e5661001c62b660bbcea5264c8aa5">
<span class="new-file">
+
run_discoSnp++_ML.sh
</span>
</a>
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<h5>The diff was not included because it is too large.</h5>
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