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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-biopython">Debian Med / python-biopython</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/python-biopython/commit/3a18cae234e919ba974bbb3425b4c4a138bc8a7c">3a18cae2</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2019-12-17T10:36:27Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Reduce the required precision in test_phenotype_fit.TestPhenoMicro
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<h4>3 changed files:</h4>
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debian/changelog
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debian/patches/ppc64el_precision
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debian/patches/series
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<h4>Changes:</h4>
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<a href="https://salsa.debian.org/med-team/python-biopython/commit/3a18cae234e919ba974bbb3425b4c4a138bc8a7c#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">python</span><span class="p">-</span><span class="n" style="color: #333;">biopython</span> <span class="p">(</span><span class="m" style="color: #099;">1.75</span><span class="p">+</span><span class="n" style="color: #333;">dfsg</span><span class="p">-</span><span class="m" style="color: #099;">4</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Team</span> <span class="n" style="color: #333;">upload</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Patch</span> <span class="n" style="color: #333;">added</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">reduce</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">required</span> <span class="n" style="color: #333;">precision</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">one</span> <span class="n" style="color: #333;">part</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">the</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"> <span class="n" style="color: #333;">test_phenotype_fit</span><span class="p">.</span><span class="n" style="color: #333;">TestPhenoMicro</span> <span class="n" style="color: #333;">test</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Michael</span> <span class="n" style="color: #333;">R</span><span class="p">.</span> <span class="n" style="color: #333;">Crusoe</span> <span class="p"><</span><span class="n" style="color: #333;">michael</span><span class="p">.</span><span class="n" style="color: #333;">crusoe</span><span class="p">@</span><span class="n" style="color: #333;">gmail</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">></span> <span class="n" style="color: #333;">Tue</span><span class="p">,</span> <span class="m" style="color: #099;">17</span> <span class="n" style="color: #333;">Dec</span> <span class="m" style="color: #099;">2019</span> <span class="m" style="color: #099;">11</span><span class="p">:</span><span class="m" style="color: #099;">35</span><span class="p">:</span><span class="m" style="color: #099;">41</span> <span class="p">+</span><span class="m" style="color: #099;">0100</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"><span class="n" style="color: #333;">python</span><span class="p">-</span><span class="n" style="color: #333;">biopython</span> <span class="p">(</span><span class="m" style="color: #099;">1.75</span><span class="p">+</span><span class="n" style="color: #333;">dfsg</span><span class="p">-</span><span class="m" style="color: #099;">3</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Team</span> <span class="n" style="color: #333;">upload</span><span class="p">.</span></span>
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<a href="https://salsa.debian.org/med-team/python-biopython/commit/3a18cae234e919ba974bbb3425b4c4a138bc8a7c#54b51ad4701b8a3f0383782f58398fa4f7ada45a"><strong>debian/patches/ppc64el_precision</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">From: Michael R. Crusoe <michael.crusoe@gmail.com></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Subject: Reduce presision in part of Tests/test_phenotype_fit.py</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-biopython.orig/Tests/test_phenotype_fit.py</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-biopython/Tests/test_phenotype_fit.py</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">@@ -56,7 +56,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> self.assertAlmostEqual(w.area, 20879.5)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> self.assertEqual(w.model, "gompertz")</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> self.assertAlmostEqual(w.lag, 6.0425868725090357, places=5)</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- self.assertAlmostEqual(w.plateau, 188.51404344898586, places=5)</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ self.assertAlmostEqual(w.plateau, 188.51404344898586, places=4)</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> self.assertAlmostEqual(w.slope, 48.190618284831132, places=4)</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> self.assertAlmostEqual(w.v, 0.10000000000000001, places=5)</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> self.assertAlmostEqual(w.y0, 45.879770069807989, places=5)</span></pre>
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<a href="https://salsa.debian.org/med-team/python-biopython/commit/3a18cae234e919ba974bbb3425b4c4a138bc8a7c#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,3 +4,4 @@ python_3.8_iteration_fix.patch</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">exclude_docstring_tests.patch</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">arm.patch</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">fix_doctests</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">ppc64el_precision</span></pre>
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