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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/pbbam">Debian Med / pbbam</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/bed06a53dc5c948b690bd3cbf43d797d357413bd">bed06a53</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-13T20:49:08Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop <!nocheck> option from python3-cram
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/24d57460ad66e32f25b8488fff4df184bddc65c5">24d57460</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-13T20:50:03Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/cec71ff4d268f6d9b65745b787bc0cc1190a0b35">cec71ff4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-13T20:50:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0.6+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/a008ff7fc34a1801ae0d28ff0a6cdc25db656ede">a008ff7f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-13T20:50:08Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.0.6+dfsg'
Update to upstream version '1.0.6+dfsg'
with Debian dir e3b95e5cf18162173aaa525d5940bd8725a9f1b5</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/e35729a725789f59cef5283916efe5cd3ca476d7">e35729a7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-13T20:50:15Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.4.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/78a1ffdef0fbbebb755ff45daa2750593d1f8da8">78a1ffde</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-13T20:50:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove patch debug_tests.patch that is missing from debian/patches/series.
Fixes lintian: patch-file-present-but-not-mentioned-in-series
See https://lintian.debian.org/tags/patch-file-present-but-not-mentioned-in-series.html for more details.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/f3fb4c3a9703b166560eb24d1e08e58c924c98c7">f3fb4c3a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-13T20:50:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/copyright: use spaces rather than tabs to start continuation lines.
Fixes lintian: tab-in-licence-text
See https://lintian.debian.org/tags/tab-in-licence-text.html for more details.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/534d5ec11fdac69a5032c9a59bf74bf4a6e33a70">534d5ec1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-13T20:50:22Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove obsolete fields Contact, Name from debian/upstream/metadata.</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/185bac2ac1332427a1303b5ca3147388c46dee6c">185bac2a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-13T21:01:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build-Depends: cmake, libpbcopper-dev
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/2ccc8ff365002df2a52b6aa257ddfa5aadd0e6ff">2ccc8ff3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-17T10:07:34Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Versioned Build-Depends: libpbcopper-dev (>= 1.3.0)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/b6e675a36b85a43fff37848d5983d4847c08f14d">b6e675a3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-17T10:07:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add TODO
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#8ab4e94f59343a8b2d003b0b47d21fff1724bfd9">
bamboo_build.sh
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#7ac79ffa6158b257c8dde04a6e73d9ee9e57196c">
<span class="deleted-file">
−
debian/patches/debug_tests.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<span class="deleted-file">
−
debian/upstream/metadata
</span>
</a>
</li>
<li class="file-stats">
<a href="#aded7756cdea7c289134466a0d54da4f26d43abb">
docs/source/conf.py
</a>
</li>
<li class="file-stats">
<a href="#feedf4d0444f717d7227468a9529c2cf9740b6fd">
include/meson.build
</a>
</li>
<li class="file-stats">
<a href="#0b230145bb13dc51db1e0e68ac2723313ee229a9">
include/pbbam/Accuracy.h
</a>
</li>
<li class="file-stats">
<a href="#97b03698cb36b558ef2b83306185f1493f428d44">
include/pbbam/AlignmentPrinter.h
</a>
</li>
<li class="file-stats">
<a href="#f747de5a3dc8c782bb99b25c9c7e5c8dfac85b5b">
<span class="new-file">
+
include/pbbam/BaiIndexCache.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#9b8e7465fdabd2180a1985fc676ea4cf29c95d7d">
include/pbbam/BaiIndexedBamReader.h
</a>
</li>
<li class="file-stats">
<a href="#e11de4080cabe1fe6fbdeab22b0f064fdbeab822">
include/pbbam/BamFile.h
</a>
</li>
<li class="file-stats">
<a href="#accf87f74fdd46233f3ca7733c793ca67088e74b">
include/pbbam/BamFileMerger.h
</a>
</li>
<li class="file-stats">
<a href="#460961253fa25e9fb04edd9d56917c4a055683d4">
include/pbbam/BamHeader.h
</a>
</li>
<li class="file-stats">
<a href="#3a425e9a92a7ed061a49ea98c687bb30cd748500">
include/pbbam/BamReader.h
</a>
</li>
<li class="file-stats">
<a href="#97939080c14fd57f90725f590b1094f8f0ee9f10">
include/pbbam/BamRecord.h
</a>
</li>
<li class="file-stats">
<a href="#967b12503062b54b346b15d4c2d01c6fdbcfbdef">
include/pbbam/BamRecordBuilder.h
</a>
</li>
<li class="file-stats">
<a href="#6f0af9cd5ecfc522cf50a17f98ffea7c95f16624">
include/pbbam/BamRecordImpl.h
</a>
</li>
<li class="file-stats">
<a href="#158e05e89acca4473ffa89f3fc109a051188ae4c">
include/pbbam/BamRecordTag.h
</a>
</li>
<li class="file-stats">
<a href="#b96a662b54ae36b7eea4f8ddbc5f90133ff94dff">
include/pbbam/BamRecordView.h
</a>
</li>
<li class="file-stats">
<a href="#941c981d5e65eb46de63f4968a345c5aa46c0385">
include/pbbam/BamTagCodec.h
</a>
</li>
<li class="file-stats">
<a href="#213872121f6ad280d08d4b11948914a21bd57a4d">
include/pbbam/BamWriter.h
</a>
</li>
<li class="file-stats">
<a href="#e1b542abeac5a2c2d91a7b9d55d1dc44d279e9fc">
include/pbbam/BarcodeQuery.h
</a>
</li>
<li class="file-stats">
<a href="#c3773cf4ce11c824ff8165babb6ff3473e82ca26">
<span class="new-file">
+
include/pbbam/BgzipFastaWriter.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#0b854c9ccc18c4f49e367dcbf0d728fbf4b18681">
<span class="new-file">
+
include/pbbam/BgzipFastqWriter.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#58fb4fa6bc7912b402b9d77baad75a3a792dfdb4">
<span class="new-file">
+
include/pbbam/BgzipWriter.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#d0cddba547d6512eef96021d550c8018285b3c44">
include/pbbam/Cigar.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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