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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/pbgenomicconsensus">Debian Med / pbgenomicconsensus</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/1a1b85f65b7a26cd268f13854a8e254f3055aed8">1a1b85f6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-18T15:36:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use 2to3 to port from Python2 to Python3
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/005b24c70864f77d07963cdba9b832f3ad1fa14c">005b24c7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-18T15:36:56Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/a0579e221faf1669906b71b777d7e68fa5d8c258">a0579e22</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-18T15:36:57Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.3.3</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/bc21889feca092dba87d8675dd2f59126718f799">bc21889f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-18T15:37:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.3.3'
Update to upstream version '2.3.3'
with Debian dir a3103ac7ccdc875f9c226189208fa14cc1de0794</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/6932f0a1962788fd9ad590f5d752e71ced3d91bf">6932f0a1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-18T15:37:29Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/caabee545b58d3b389cca1e34db28b8e8f98e991">caabee54</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-18T15:37:32Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.4.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/29b3e012db4ba49701b2bd8c41611299fb34a8ce">29b3e012</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-18T15:41:53Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/4ee1988cd3776017e4054a3fb8b6490d1e7f16ff">4ee1988c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-18T15:45:42Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Python3 in packaging information
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/442fe3727a4147d639752b71916b0490ef83fbed">442fe372</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-18T15:55:11Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">TODO: unanimity to get python3-consensuscore2
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#99c738e7d1f1f228db3f2802b37507b0ff0d0c0d">
GenomicConsensus/ResultCollector.py
</a>
</li>
<li class="file-stats">
<a href="#438f7a424514a3e27a4a6fd3606f44eb75491140">
GenomicConsensus/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#e98081513decc5c2f9c0b043551255f723e3e716">
GenomicConsensus/arrow/arrow.py
</a>
</li>
<li class="file-stats">
<a href="#48d5db9c8417ce95dae83f2d5437fea893c40f2a">
GenomicConsensus/arrow/model.py
</a>
</li>
<li class="file-stats">
<a href="#008d0e3444457abc4db366abc89cfc552c420f08">
GenomicConsensus/io/VariantsGffWriter.py
</a>
</li>
<li class="file-stats">
<a href="#07e6c57b2dbb1ad4d9cbe7d61e28b7da0035184e">
GenomicConsensus/io/VariantsVcfWriter.py
</a>
</li>
<li class="file-stats">
<a href="#4e9778bec0a993507bd561e9780cca7aea66c050">
GenomicConsensus/options.py
</a>
</li>
<li class="file-stats">
<a href="#15717a3bfe329895159f1f07cab42c961286f088">
GenomicConsensus/poa/poa.py
</a>
</li>
<li class="file-stats">
<a href="#4b0c4cfefba6ba2c26cd101d3e75167978675c95">
GenomicConsensus/quiver/quiver.py
</a>
</li>
<li class="file-stats">
<a href="#e6b22af8a7794963f75a0e874a49e6d946562e46">
GenomicConsensus/variants.py
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSES
→
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
MANIFEST.in
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#8ab4e94f59343a8b2d003b0b47d21fff1724bfd9">
bamboo_build.sh
</a>
</li>
<li class="file-stats">
<a href="#4ba2d7a35ab8ebb7591ec82843466797567f7a10">
bin/gffToBed
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
<span class="new-file">
+
debian/patches/2to3.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#df0576cbb783bc50b36e1efa3cbe0564a26c8295">
doc/conf.py
</a>
</li>
<li class="file-stats">
<a href="#9368445e6ae7ddf3770c5b9346191b8c3783f653">
scripts/ci/build.sh
</a>
</li>
<li class="file-stats">
<a href="#9ea7ba3e397712057afe008b4efa78e61af3d9cd">
<span class="new-file">
+
scripts/ci/setup.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#dc4d5d1220b0cd2b76cb436a076ddf99d8de0fdb">
<span class="new-file">
+
scripts/ci/test.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#17578dc0813a46c3b563d8bbc40c5360e1124b3e">
<span class="deleted-file">
−
scripts/nightly/build.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#3dba9412adb7094797d775feafcd655f24bb726c">
<span class="deleted-file">
−
scripts/nightly/test.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
</a>
</li>
<li class="file-stats">
<a href="#80753364ed500dbeacc378880ea8eacc86b0ccc3">
tests/cram/arrow-all4mer-diploid.t
</a>
</li>
<li class="file-stats">
<a href="#fc0f82229e23cec09bfca2c1e4dfde6124135457">
tests/cram/internal/quiver-ecoli.t
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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