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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/macs">Debian Med / macs</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/macs/commit/6e58c6f53eb662d1bfc5be1cef54c32d5106ec83">6e58c6f5</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-12-20T19:31:01Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Run even more tests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/macs/commit/79190d380779370bf4a48f36631139d3c4e0f318">79190d38</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2019-12-20T21:15:52Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix test failure
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/macs/commit/bb2bd676c6b8b2dc7d1eaa278e76d52f3a69a35f">bb2bd676</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2019-12-20T21:24:27Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">2.2.6-2
</pre>
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<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#f5f51601866c86e59a004bd93fa415f5675be8c5">
debian/clean
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#a09d49d07e0da9ad1d5556d6639b4753f9457cf1">
<span class="new-file">
+
debian/patches/fix_test_signal_failures
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
debian/patches/spelling
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/macs/compare/52690ccfc926aafc8f987dae1e00393aeee7e86d...bb2bd676c6b8b2dc7d1eaa278e76d52f3a69a35f#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">macs (2.2.6-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Run even more tests.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Patch from upstream to fix test that fails with Python 3.8.1rc1+</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Fri, 20 Dec 2019 13:24:14 -0800</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">macs (2.2.6-1) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<li id="f5f51601866c86e59a004bd93fa415f5675be8c5">
<a href="https://salsa.debian.org/med-team/macs/compare/52690ccfc926aafc8f987dae1e00393aeee7e86d...bb2bd676c6b8b2dc7d1eaa278e76d52f3a69a35f#f5f51601866c86e59a004bd93fa415f5675be8c5"><strong>debian/clean</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">.pytest_cache</span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">.pytest_cache<span class="idiff left right">/</span></span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/macs/compare/52690ccfc926aafc8f987dae1e00393aeee7e86d...bb2bd676c6b8b2dc7d1eaa278e76d52f3a69a35f#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,7 +10,8 @@ Build-Depends: debhelper-compat (= 12),</td>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> python3-numpy,</span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> python3-setuptools,</span>
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> python3-pytest,</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> help2man</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> help2man,</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> procps</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Standards-Version: 4.4.1</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/macs</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/macs.git</span>
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<a href="https://salsa.debian.org/med-team/macs/compare/52690ccfc926aafc8f987dae1e00393aeee7e86d...bb2bd676c6b8b2dc7d1eaa278e76d52f3a69a35f#a09d49d07e0da9ad1d5556d6639b4753f9457cf1"><strong>debian/patches/fix_test_signal_failures</strong></a>
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<a href="https://salsa.debian.org/med-team/macs/compare/52690ccfc926aafc8f987dae1e00393aeee7e86d...bb2bd676c6b8b2dc7d1eaa278e76d52f3a69a35f#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">spelling</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">fix_test_signal_failures</span></pre>
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<a href="https://salsa.debian.org/med-team/macs/compare/52690ccfc926aafc8f987dae1e00393aeee7e86d...bb2bd676c6b8b2dc7d1eaa278e76d52f3a69a35f#e4c19aed51618bf0c7ebd03189c67e422f84d4eb"><strong>debian/patches/spelling</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">From: Michael R. Crusoe <michael.crusoe@gmail.com></span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Subject: typo fix</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- <span class="idiff left right">a</span>/MACS2/IO/CallPeakUnit.pyx</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ <span class="idiff left right">b</span>/MACS2/IO/CallPeakUnit.pyx</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"><span class="p">@@ -4<span class="idiff left">13,7 +413,7 @@</span></span><span class="idiff right"> cdef class CallerFromAlignments:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- <span class="idiff left right">macs.orig</span>/MACS2/IO/CallPeakUnit.pyx</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ <span class="idiff left right">macs</span>/MACS2/IO/CallPeakUnit.pyx</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">@@ -4<span class="idiff left right">35,7 +435,7 @@</span></span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> self.cutoff_analysis_filename = cutoff_analysis_filename.encode()</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"> cpdef destroy ( self ):</span>
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<a href="https://salsa.debian.org/med-team/macs/compare/52690ccfc926aafc8f987dae1e00393aeee7e86d...bb2bd676c6b8b2dc7d1eaa278e76d52f3a69a35f#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,6 +30,16 @@ override_dh_auto_build:</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> "python3 bin/macs2 $${subcommand}" > \</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> debian/macs2_$${subcommand}.1; done</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> dh_auto_test</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> cd test && for PY3VER in $(shell py3versions -vs); do \</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> export PATH=$(CURDIR)/build/scripts-$${PY3VER}:$$PATH \</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> && export PYTHONPATH=$(CURDIR)/.pybuild/cpython3_$${PY3VER}_MACS2/build \</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> && ./cmdlinetest macs$(DEB_VERSION)-$${PY3VER} ; done</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"></span>
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33
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42
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">override_dh_auto_clean:</span>
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34
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> dh_auto_clean</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> rm -Rf test/macs$(DEB_VERSION)* test/speedtest*</span>
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35
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> rm -f debian/*.1 debian/*-man-include</span></pre>
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