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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-biom-format">Debian Med / python-biom-format</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biom-format/commit/1468aed8a7834cdb407bdfaedbcb8835b80b8cf0">1468aed8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-22T06:21:34Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Repository, Repository-Browse.</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biom-format/commit/182b6d68b5eb682c7cbac152e20d210d4282edf2">182b6d68</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-22T06:50:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix Build time test
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/python-biom-format/commit/34d302c38d2c00aed63041154b8362635cae43a0">34d302c3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-12-22T06:55:55Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-biom-format/compare/b3f60991d1c2ea4f7e3502237536df6960bdf94a...34d302c38d2c00aed63041154b8362635cae43a0#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-biom-format (2.1.7+dfsg-5) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Database, Repository, Repository-</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Browse.</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Fix Build time test</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> Closes: #943622</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sun, 22 Dec 2019 07:51:11 +0100</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">python-biom-format (2.1.7+dfsg-4) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> [ Steve Langasek ]</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/python-biom-format/compare/b3f60991d1c2ea4f7e3502237536df6960bdf94a...34d302c38d2c00aed63041154b8362635cae43a0#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,6 +9,7 @@ export PYBUILD_NAME=biom-format</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">export PYBUILD_DESTDIR_python3=debian/python3-$(PYBUILD_NAME)</span>
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<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">export examplepkg=python-$(PYBUILD_NAME)-examples</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">export PYBUILD_AFTER_INSTALL_python3=dh_numpy3</span>
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<td class="diff-line-num new old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">export PYBUILD_BEFORE_TEST=cp -r {dir}/examples {build_dir}</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">## When trying better hardening the build fails</span>
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"># export DEB_BUILD_MAINT_OPTIONS = hardening=+all</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28,16 +29,6 @@ override_dh_installdocs-indep:</td>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> dh_installdocs --indep</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> dh_sphinxdoc --indep</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"># replace cp by ln to close bug #919586</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> cp -a examples $(shell pybuild --print build_dir --interpreter python)</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> cp -a examples $(shell pybuild --print build_dir --interpreter python3)</span>
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36
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"># ln -s $(CURDIR)/examples $(shell pybuild --print build_dir --interpreter python)</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"># ln -s $(CURDIR)/examples $(shell pybuild --print build_dir --interpreter python3)</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> dh_auto_test</span>
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39
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext">endif</span>
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40
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"></span>
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41
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">override_dh_fixperms:</span>
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42
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> dh_fixperms</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> find debian -name exercise_cli.sh -exec chmod +x \{\} \;</span>
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<a href="https://salsa.debian.org/med-team/python-biom-format/compare/b3f60991d1c2ea4f7e3502237536df6960bdf94a...34d302c38d2c00aed63041154b8362635cae43a0#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,4 +14,6 @@ Reference:</td>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> DOI: 10.1186/2047-217X-1-7</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> URL: http://www.gigasciencejournal.com/content/1/1/7</span>
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> eprint: http://www.gigasciencejournal.com/content/pdf/2047-217X-1-7.pdf</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">Repository: https://github.com/biocore/biom-format</span></pre>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">Repository: https://github.com/biocore/biom-format.git</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">Bug-Database: https://github.com/biocore/biom-format/issues</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">Repository-Browse: https://github.com/biocore/biom-format</span></pre>
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