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<h3>
Liubov Chuprikova pushed to branch master
at <a href="https://salsa.debian.org/med-team/q2-taxa">Debian Med / q2-taxa</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/q2-taxa/commit/5aec2436fbd73fc8b89937ea348fbfc44ea54d0e">5aec2436</a></strong>
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<span>by Liubov Chuprikova</span>
<i>at 2019-12-29T21:18:25Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2019.10.0</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/q2-taxa/commit/d85b392ca478d98c54b63becba21ab0f1e547c98">d85b392c</a></strong>
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<span>by Liubov Chuprikova</span>
<i>at 2019-12-29T21:18:26Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2019.10.0'
Update to upstream version '2019.10.0'
with Debian dir 80da01ae9484594be63f0a8de07817c60f63b2f3</pre>
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<strong><a href="https://salsa.debian.org/med-team/q2-taxa/commit/288536309116f761ea15325741dc77a4b4dba870">28853630</a></strong>
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<span>by Liubov Chuprikova</span>
<i>at 2019-12-29T21:19:26Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#1d474d05be0b5c09809046c47577874bc381d4d5">
q2_taxa/_version.py
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<li class="file-stats">
<a href="#8833ba7fa943e1c897add380821376320a7b5009">
q2_taxa/_visualizer.py
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/q2-taxa/compare/d32fedc8f22da3ed440a5d5920dfda2a11bfc956...288536309116f761ea15325741dc77a4b4dba870#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">q2-taxa (2019.<span class="idiff left right">7</span>.0-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">q2-taxa (2019.<span class="idiff left right">10</span>.0-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * New upstream version</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * debhelper-compat 12</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> * Specify the required version of qiime2 and plugins</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> -- Liubov Chuprikova <chuprikovalv@gmail.com> <span class="idiff left right">Sat, 07 Sep 2019 14:39:31 +02</span>00</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Liubov Chuprikova <chuprikovalv@gmail.com> <span class="idiff left right">Mon, 30 Dec 2019 00:18:52 +03</span>00</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">q2-taxa (2019.4.0-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<li id="1d474d05be0b5c09809046c47577874bc381d4d5">
<a href="https://salsa.debian.org/med-team/q2-taxa/compare/d32fedc8f22da3ed440a5d5920dfda2a11bfc956...288536309116f761ea15325741dc77a4b4dba870#1d474d05be0b5c09809046c47577874bc381d4d5"><strong>q2_taxa/_version.py</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,9 +23,9 @@ def get_keywords():</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># setup.py/versioneer.py will grep for the variable names, so they must</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># each be defined on a line of their own. _version.py will just call</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># get_keywords().</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="python"> <span class="n" style="color: #333;">git_refnames</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">" (tag: 2019.<span class="idiff left right">7</span>.0)"</span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="python"> <span class="n" style="color: #333;">git_full</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"<span class="idiff left right">bc018fe8540f9f0fb4f4cf6729d840a53f5d8c3</span>1"</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="python"> <span class="n" style="color: #333;">git_date</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"2019-<span class="idiff left right">07-30 18:15:55</span> +0000"</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"> <span class="n" style="color: #333;">git_refnames</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">" (tag: 2019.<span class="idiff left right">10</span>.0)"</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"> <span class="n" style="color: #333;">git_full</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"<span class="idiff left right">32a88e36b612e5a6b9fa1239076096e91b7ffae</span>1"</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"> <span class="n" style="color: #333;">git_date</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"2019-<span class="idiff left right">11-01 01:04:24</span> +0000"</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="python"> <span class="n" style="color: #333;">keywords</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span><span class="s" style="color: #d14;">"refnames"</span><span class="p">:</span> <span class="n" style="color: #333;">git_refnames</span><span class="p">,</span> <span class="s" style="color: #d14;">"full"</span><span class="p">:</span> <span class="n" style="color: #333;">git_full</span><span class="p">,</span> <span class="s" style="color: #d14;">"date"</span><span class="p">:</span> <span class="n" style="color: #333;">git_date</span><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">keywords</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="python"></span>
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<a href="https://salsa.debian.org/med-team/q2-taxa/compare/d32fedc8f22da3ed440a5d5920dfda2a11bfc956...288536309116f761ea15325741dc77a4b4dba870#8833ba7fa943e1c897add380821376320a7b5009"><strong>q2_taxa/_visualizer.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,7 +26,7 @@ def barplot(output_dir: str, table: pd.DataFrame, taxonomy: pd.Series,</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python"> <span class="n" style="color: #333;">metadata</span><span class="p">:</span> <span class="n" style="color: #333;">Metadata</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-></span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="python"> <span class="n" style="color: #333;">ids_not_in_metadata</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="n" style="color: #333;">table</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">index</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-</span> <span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="n" style="color: #333;">metadata</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ids</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ids_not_in_metadata</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">(</span><span class="s" style="color: #d14;">'<span class="idiff left right">Featur</span>e IDs found in the table are missing in the '</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"> <span class="k" style="font-weight: 600;">raise</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">(</span><span class="s" style="color: #d14;">'<span class="idiff left right">Sampl</span>e IDs found in the table are missing in the '</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="python"> <span class="n" style="color: #333;">f</span><span class="s" style="color: #d14;">'metadata: {ids_not_in_metadata!r}.'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="python"> <span class="n" style="color: #333;">metadata</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">metadata</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">to_dataframe</span><span class="p">()</span></span>
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