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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/729f363d06a8d8e3617363dbbf65d12b30d7baea">729f363d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-12-16T11:19:00Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.8.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/76e134963a1e3dc1315ebedf546e32e8879a9fea">76e13496</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-12-16T11:19:16Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.8.2'
Update to upstream version '5.8.2'
with Debian dir 0473d05d09a8c0adbf7c436f3b6538e5ff5de064</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/59ae41e7a974ab08b398343132f8167f2411b8d9">59ae41e7</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-12-16T11:23:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">5.8.2-1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/bab44c2c1602a9ad0322b94a79f0733565c057ac">bab44c2c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-01T13:05:52Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/a41c77bf4659faea3efefd7aa8ed8e75879b2c7f">a41c77bf</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-01T13:05:53Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.9.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/2a0a9931f9bc02f31ea249a45a99aca2b1aaa3af">2a0a9931</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-01T13:06:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.9.1'
Update to upstream version '5.9.1'
with Debian dir 2c42240972fe9dd24628483d43ed7912b756b22b</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/0e65b96083bab680770c32d1f7f2b7c4d64e2b9d">0e65b960</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-01T14:22:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">exclude test_env_modules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/8aeb70459252ee398e6c890c615826236f69a0f3">8aeb7045</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-01T15:06:55Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">5.9.1-1
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7f9004ad0df1b6391abc998d9a153f9e763cbdd7">
<span class="new-file">
+
.github/CODEOWNERS
</span>
</a>
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<li class="file-stats">
<a href="#c778226b6c4c0fb51cf7942c8ee1f3d9fc1249d0">
.github/workflows/main.yml
</a>
</li>
<li class="file-stats">
<a href="#45267e3a9556cafa9cb7b61dab7a3b6659e73aad">
CHANGELOG.rst
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#14311a7e2fde4d3f5412d248239270f0dcead73f">
debian/patches/0012-reproducible-build.patch
</a>
</li>
<li class="file-stats">
<a href="#0a4e986b60a9240ca7d53abf5e2ed246987e8ffc">
debian/patches/python3
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#85ccdeeb03055211183e48520592d9a93592b330">
debian/source/lintian-overrides
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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</li>
<li class="file-stats">
<a href="#aa070a9c9eb13bc0377eb60b4ef071df17152ac7">
docs/executing/caching.rst
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</li>
<li class="file-stats">
<a href="#d0153cac95479af9bfb99b746b633bc8255bb53a">
docs/index.rst
</a>
</li>
<li class="file-stats">
<a href="#945ec74fc1c17902d98bca84b7a1f0dfd755c01b">
docs/snakefiles/deployment.rst
</a>
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<li class="file-stats">
<a href="#dfeb7b6e739ba66056c1799c63a5a39c7698b59f">
docs/snakefiles/rules.rst
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<li class="file-stats">
<a href="#93270ff2eb7f389db8b4ad6035cb96e4e1622227">
docs/tutorial/setup.rst
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<li class="file-stats">
<a href="#cf170f1aad8eab1ea8f50709422e4eae4ebaf604">
docs/tutorial/short.rst
</a>
</li>
<li class="file-stats">
<a href="#c2acba86d5ef7b186a3f54c5fcbfeeb889e18738">
misc/vim/syntax/snakemake.vim
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</li>
<li class="file-stats">
<a href="#3e5f5b55323fd8fdb574fbe9d3948896a37918b1">
<span class="new-file">
+
motoState.p
</span>
</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
</a>
</li>
<li class="file-stats">
<a href="#d366205d7cd679ff6d4a61f70728e92537101763">
snakemake/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#5e16cbeea010f59dbef52f8950f4873c94f39c7e">
snakemake/_version.py
</a>
</li>
<li class="file-stats">
<a href="#1f2b5ab7db93d7cfd11a4660dfd26daffc5b38dc">
snakemake/caching/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#be949de8c0e74a7737ba3be8743dda889e7d51bf">
snakemake/caching/hash.py
</a>
</li>
<li class="file-stats">
<a href="#5752dcb5dceb2252f447b747551b9e646cf1865e">
snakemake/caching/local.py
</a>
</li>
<li class="file-stats">
<a href="#b37760e766d43fdddb378b4d0302d4ad6fa1e3c3">
snakemake/caching/remote.py
</a>
</li>
<li class="file-stats">
<a href="#42300b585ee7e51f9c6cfad5a88cf8ed5c4bd8fa">
snakemake/cwl.py
</a>
</li>
<li class="file-stats">
<a href="#9821437dfb3fff8383b6066a2a3c7aa3f6712a32">
snakemake/dag.py
</a>
</li>
<li class="file-stats">
<a href="#5e42ab6605b90a29c9af9af94b5c35da8f4cf53d">
<span class="new-file">
+
snakemake/deployment/__init__.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#f15af42c37739d075863d61c80d393b9af0c346c">
snakemake/conda.py
→
snakemake/deployment/conda.py
</a>
</li>
<li class="file-stats">
<a href="#0f9eb0bffc53e805bc744def8e6b18f97406aa34">
<span class="new-file">
+
snakemake/deployment/env_modules.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#a8d87906134f355c097f5aed2ab6a5477ec364e0">
snakemake/singularity.py
→
snakemake/deployment/singularity.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777;">
—
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<a href="https://salsa.debian.org/med-team/snakemake/compare/40c648afe786196da8c53d8fc96b636280715938...8aeb70459252ee398e6c890c615826236f69a0f3">View it on GitLab</a>.
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