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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/libbio-db-swissprot-perl">Debian Med / libbio-db-swissprot-perl</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/libbio-db-swissprot-perl/commit/1b30acfad714f1d063806ee32a346e25fe11f8b5">1b30acfa</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-01-01T11:57:42Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.7.4</pre>
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<h4>7 changed files:</h4>
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<a href="#8aa57de6dce6ee1c35c6aba7426503281876b258">
Changes
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<a href="#4a6da301633ce81aa21cac64ffb95d87c6894995">
META.json
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<a href="#3b7f8f92275828b66b32cb6c6aeb61e73c1d7587">
META.yml
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<a href="#a6a4139b0f32af1594c237ebe008acaf8217f505">
Makefile.PL
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<a href="#384adeead2ae33537082bc3db4b10a27220e76ca">
dist.ini
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<li class="file-stats">
<a href="#6e9aab7de557f108ebd5c151358830ac8a26c429">
lib/Bio/DB/SwissProt.pm
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<li class="file-stats">
<a href="#41867793fa5b6c66557ce83470d3abff13aa59ca">
t/SwissProt.t
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<h4>Changes:</h4>
<li id="8aa57de6dce6ee1c35c6aba7426503281876b258">
<a href="https://salsa.debian.org/med-team/libbio-db-swissprot-perl/commit/1b30acfad714f1d063806ee32a346e25fe11f8b5#8aa57de6dce6ee1c35c6aba7426503281876b258"><strong>Changes</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Summary of important user-visible changes for Bio-DB-SwissProt</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">--------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">1.7.4 2019-12-07 16:07:46-06:00 America/Chicago</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Fixes for issues related to using Bio::Root::Test (issue #3) </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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4
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">1.7.3 2019-11-27 18:56:08-06:00 America/Chicago</span>
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5
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> * First release after split from bioperl-live.</span></pre>
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<a href="https://salsa.debian.org/med-team/libbio-db-swissprot-perl/commit/1b30acfad714f1d063806ee32a346e25fe11f8b5#4a6da301633ce81aa21cac64ffb95d87c6894995"><strong>META.json</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,12 +39,14 @@</td>
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39
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39
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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<td class="diff-line-num old_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
40
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<td class="diff-line-num new_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"test"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"requires"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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42
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<td class="diff-line-num new_line old" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Bio::Root::Test"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
43
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<td class="diff-line-num new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
42
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC42" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"File::Spec"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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44
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<td class="diff-line-num new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC43" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"IO::Handle"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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45
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<td class="diff-line-num new_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
44
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"IPC::Open3"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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46
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<td class="diff-line-num new_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
45
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC45" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Test::More"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Test::Needs"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"Test::RequiresInternet"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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47
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<td class="diff-line-num new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
48
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC48" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"perl"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"5.006"</span><span class="p">,</span></span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"utf8"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
48
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<td class="diff-line-num new_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
50
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"warnings"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"0"</span></span>
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49
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<td class="diff-line-num new_line" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
51
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">}</span></span>
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50
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<td class="diff-line-num new_line" data-linenumber="52" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
52
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -62,7 +64,7 @@</td>
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<td class="diff-line-num old_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
62
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<td class="diff-line-num new_line" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
64
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"web"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"https://github.com/bioperl/bio-db-swissprot"</span></span>
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<td class="diff-line-num old_line" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
63
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<td class="diff-line-num new_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
65
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">}</span></span>
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<td class="diff-line-num old_line" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
64
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<td class="diff-line-num new_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
66
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC66" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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<td class="diff-line-num old old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
65
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<td class="diff-line-num new_line old" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"1.7.<span class="idiff left right">3</span>"</span><span class="p">,</span></span>
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<td class="diff-line-num new old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
67
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC67" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"1.7.<span class="idiff left right">4</span>"</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
66
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<td class="diff-line-num new_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
68
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"x_Dist_Zilla"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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<td class="diff-line-num old_line" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
67
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<td class="diff-line-num new_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
69
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"perl"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="p">{</span></span>
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<td class="diff-line-num old_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
68
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<td class="diff-line-num new_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
70
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC70" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"version"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"5.028001"</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -298,7 +300,7 @@</td>
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<td class="diff-line-num old_line" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
298
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<td class="diff-line-num new_line" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
300
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"branch"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="kc" style="font-weight: 600;">null</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
299
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<td class="diff-line-num new_line" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
301
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"changelog"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Changes"</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
300
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<td class="diff-line-num new_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
302
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"signed"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
301
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<td class="diff-line-num new_line old" data-linenumber="303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"tag"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Bio-DB-SwissProt-v1.7.<span class="idiff left right">3</span>"</span><span class="p">,</span></span>
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<td class="diff-line-num new old_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
303
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC303" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"tag"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"Bio-DB-SwissProt-v1.7.<span class="idiff left right">4</span>"</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
302
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<td class="diff-line-num new_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
304
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"tag_format"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"%N-v%v"</span><span class="p">,</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
303
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<td class="diff-line-num new_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
305
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="nl">"tag_message"</span><span class="w" style="color: #bbb;"> </span><span class="p">:</span><span class="w" style="color: #bbb;"> </span><span class="s2" style="color: #d14;">"%N-v%v"</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
304
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<td class="diff-line-num new_line" data-linenumber="306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
306
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<pre style="margin: 0;"> <span id="LC306" class="line" lang="json"><span class="w" style="color: #bbb;"> </span><span class="p">},</span></span>
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<li id="3b7f8f92275828b66b32cb6c6aeb61e73c1d7587">
<a href="https://salsa.debian.org/med-team/libbio-db-swissprot-perl/commit/1b30acfad714f1d063806ee32a346e25fe11f8b5#3b7f8f92275828b66b32cb6c6aeb61e73c1d7587"><strong>META.yml</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,12 +3,14 @@ abstract: 'Database object interface to SwissProt retrieval'</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="yaml"><span class="na" style="color: #008080;">author</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">Jason</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">Stajich</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;"><jason@bioperl.org>'</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="yaml"><span class="na" style="color: #008080;">build_requires</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="yaml"> <span class="s" style="color: #d14;">Bio::Root::Test: '0'</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="yaml"> <span class="s" style="color: #d14;">File::Spec: '0'</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="yaml"> <span class="s" style="color: #d14;">IO::Handle: '0'</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="yaml"> <span class="s" style="color: #d14;">IPC::Open3: '0'</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="yaml"> <span class="s" style="color: #d14;">Test::More: '0'</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="yaml"> <span class="s" style="color: #d14;">Test::Needs: '0'</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="yaml"> <span class="s" style="color: #d14;">Test::RequiresInternet: '0'</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="yaml"> <span class="s" style="color: #d14;">perl</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">5.006'</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="yaml"> <span class="na" style="color: #008080;">utf8</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">0'</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="yaml"> <span class="na" style="color: #008080;">warnings</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">0'</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="yaml"><span class="na" style="color: #008080;">configure_requires</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="yaml"> <span class="s" style="color: #d14;">ExtUtils::MakeMaker: '0'</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28,7 +30,7 @@ resources:</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="yaml"> <span class="na" style="color: #008080;">bugtracker</span><span class="pi">:</span> <span class="s" style="color: #d14;">https://github.com/bioperl/bio-db-swissprot/issues</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="yaml"> <span class="na" style="color: #008080;">homepage</span><span class="pi">:</span> <span class="s" style="color: #d14;">https://metacpan.org/release/Bio-DB-SwissProt</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="yaml"> <span class="na" style="color: #008080;">repository</span><span class="pi">:</span> <span class="s" style="color: #d14;">git://github.com/bioperl/bio-db-swissprot.git</span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="yaml"><span class="na" style="color: #008080;">version</span><span class="pi">:</span> <span class="s" style="color: #d14;">1.7.<span class="idiff left right">3</span></span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="yaml"><span class="na" style="color: #008080;">version</span><span class="pi">:</span> <span class="s" style="color: #d14;">1.7.<span class="idiff left right">4</span></span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="yaml"><span class="na" style="color: #008080;">x_Dist_Zilla</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="yaml"> <span class="na" style="color: #008080;">perl</span><span class="pi">:</span></span>
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34
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="yaml"> <span class="na" style="color: #008080;">version</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">5.028001'</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -213,7 +215,7 @@ x_Dist_Zilla:</td>
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213
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215
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="yaml"> <span class="s" style="color: #d14;">branch</span><span class="pi">:</span> <span class="s" style="color: #d14;">~</span></span>
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214
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216
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="yaml"> <span class="s" style="color: #d14;">changelog</span><span class="pi">:</span> <span class="s" style="color: #d14;">Changes</span></span>
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215
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217
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="yaml"> <span class="s" style="color: #d14;">signed</span><span class="pi">:</span> <span class="m" style="color: #099;">0</span></span>
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216
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="yaml"> <span class="na" style="color: #008080;">tag</span><span class="pi">:</span> <span class="s" style="color: #d14;">Bio-DB-SwissProt-v1.7.<span class="idiff left right">3</span></span></span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="yaml"> <span class="na" style="color: #008080;">tag</span><span class="pi">:</span> <span class="s" style="color: #d14;">Bio-DB-SwissProt-v1.7.<span class="idiff left right">4</span></span></span>
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217
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="yaml"> <span class="na" style="color: #008080;">tag_format</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">%N-v%v'</span></span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="yaml"> <span class="na" style="color: #008080;">tag_message</span><span class="pi">:</span> <span class="s1" style="color: #d14;">'</span><span class="s" style="color: #d14;">%N-v%v'</span></span>
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219
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="yaml"> <span class="s" style="color: #d14;">Dist::Zilla::Role::Git::Repo:</span></span>
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<li id="a6a4139b0f32af1594c237ebe008acaf8217f505">
<a href="https://salsa.debian.org/med-team/libbio-db-swissprot-perl/commit/1b30acfad714f1d063806ee32a346e25fe11f8b5#a6a4139b0f32af1594c237ebe008acaf8217f505"><strong>Makefile.PL</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,14 +23,16 @@ my %WriteMakefileArgs = (</td>
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"> <span class="s2" style="color: #d14;">"strict"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">},</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="make"> <span class="s2" style="color: #d14;">"TEST_REQUIRES"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">{</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::Root::Test"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="make"> <span class="s2" style="color: #d14;">"File::Spec"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="make"> <span class="s2" style="color: #d14;">"IO::Handle"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="make"> <span class="s2" style="color: #d14;">"IPC::Open3"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="make"> <span class="s2" style="color: #d14;">"Test::More"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="make"> <span class="s2" style="color: #d14;">"Test::Needs"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="make"> <span class="s2" style="color: #d14;">"Test::RequiresInternet"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="make"> <span class="s2" style="color: #d14;">"utf8"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="make"> <span class="s2" style="color: #d14;">"warnings"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">},</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="make"> <span class="s2" style="color: #d14;">"VERSION"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="s2" style="color: #d14;">"1.7.<span class="idiff left right">3</span>"</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">,</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="make"> <span class="s2" style="color: #d14;">"VERSION"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="s2" style="color: #d14;">"1.7.<span class="idiff left right">4</span>"</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">,</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="make"> <span class="s2" style="color: #d14;">"test"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">{</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="make"> <span class="s2" style="color: #d14;">"TESTS"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="s2" style="color: #d14;">"t/*.t"</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">}</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,14 +41,16 @@ my %WriteMakefileArgs = (</td>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">my</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">%</span><span class="nv" style="color: #008080;">FallbackPrereqs</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">(</span></span>
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43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::DB::WebDBSeqI"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="make"> <span class="s2" style="color: #d14;">"Bio::Root::Test"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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44
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="make"> <span class="s2" style="color: #d14;">"File::Spec"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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45
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="make"> <span class="s2" style="color: #d14;">"HTTP::Request::Common"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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46
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="make"> <span class="s2" style="color: #d14;">"IO::Handle"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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47
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="make"> <span class="s2" style="color: #d14;">"IPC::Open3"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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48
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="make"> <span class="s2" style="color: #d14;">"Test::More"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="make"> <span class="s2" style="color: #d14;">"Test::Needs"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="make"> <span class="s2" style="color: #d14;">"Test::RequiresInternet"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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51
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="make"> <span class="s2" style="color: #d14;">"base"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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52
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="make"> <span class="s2" style="color: #d14;">"strict"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="make"> <span class="s2" style="color: #d14;">"utf8"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0,</span></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="make"> <span class="s2" style="color: #d14;">"warnings"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">=></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">0</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">);</span></span>
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<a href="https://salsa.debian.org/med-team/libbio-db-swissprot-perl/commit/1b30acfad714f1d063806ee32a346e25fe11f8b5#384adeead2ae33537082bc3db4b10a27220e76ca"><strong>dist.ini</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="ini"><span class="py">name</span> <span class="p">=</span> <span class="s" style="color: #d14;">Bio-DB-SwissProt</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="ini"><span class="py">version</span> <span class="p">=</span> <span class="s" style="color: #d14;">1.7.<span class="idiff left right">3</span></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="ini"><span class="py">version</span> <span class="p">=</span> <span class="s" style="color: #d14;">1.7.<span class="idiff left right">4</span></span></span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="ini"><span class="py">author</span> <span class="p">=</span> <span class="s" style="color: #d14;">Jason Stajich <jason@bioperl.org></span></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="ini"><span class="py">copyright_holder</span> <span class="p">=</span> <span class="s" style="color: #d14;">Jason Stajich <jason@bioperl.org></span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="ini"><span class="py">license</span> <span class="p">=</span> <span class="s" style="color: #d14;">Perl_5</span></span>
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<a href="https://salsa.debian.org/med-team/libbio-db-swissprot-perl/commit/1b30acfad714f1d063806ee32a346e25fe11f8b5#6e9aab7de557f108ebd5c151358830ac8a26c429"><strong>lib/Bio/DB/SwissProt.pm</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -108,7 +108,7 @@ methods. Internal methods are usually preceded with a _</td>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Let the code begin...</span></span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="perl"><span class="nb" style="color: #0086b3;">package</span> <span class="nn" style="color: #555;">Bio::DB::</span><span class="nv" style="color: #008080;">SwissProt</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SwissProt::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">3</span></span><span class="p">';</span></span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="perl"><span class="nv" style="color: #008080;">$</span><span class="nn" style="color: #555;">Bio::DB::SwissProt::</span><span class="nv" style="color: #008080;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">'</span><span class="s1" style="color: #d14;">1.7.<span class="idiff left right">4</span></span><span class="p">';</span></span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">strict</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">HTTP::Request::</span><span class="nv" style="color: #008080;">Common</span><span class="p">;</span></span>
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<a href="https://salsa.debian.org/med-team/libbio-db-swissprot-perl/commit/1b30acfad714f1d063806ee32a346e25fe11f8b5#41867793fa5b6c66557ce83470d3abff13aa59ca"><strong>t/SwissProt.t</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#<span class="idiff left right"> -*-Perl-*- Test Harness script for Bio</span>perl</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"><span class="idiff left right"># $Id$</span></span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#<span class="idiff left right">!/usr/bin/env </span>perl</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="perl"><span class="k" style="font-weight: 600;"><span class="idiff left">use</span></span><span class="idiff"> </span><span class="nv" style="color: #008080;"><span class="idiff">utf8</span></span><span class="p"><span class="idiff right">;</span></span></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">strict</span><span class="p">;</span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">warnings</span><span class="p">;</span></span>
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5
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="perl"></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="perl"><span class="k" style="font-weight: 600;">BEGIN</span> <span class="p">{</span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="perl"> <span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Bio::Root::</span><span class="nv" style="color: #008080;">Test</span><span class="p">;</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Test::</span><span class="nv" style="color: #008080;">More</span><span class="p">;</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Test::</span><span class="nv" style="color: #008080;">Needs</span> <span class="sx" style="color: #d14;">qw(LWP::UserAgent HTTP::Request::Common Data::Stag)</span><span class="p">;</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Test::</span><span class="nv" style="color: #008080;">RequiresInternet</span><span class="p">;</span></span>
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8
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="perl"></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="perl"> <span class="nv" style="color: #008080;">test_begin</span><span class="p">(</span><span class="o" style="font-weight: 600;">-</span><span class="nv" style="color: #008080;">tests</span> <span class="o" style="font-weight: 600;">=></span> <span class="mi" style="color: #099;">23</span><span class="p">,</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="perl"> <span class="o" style="font-weight: 600;">-</span><span class="nv" style="color: #008080;">requires_modules</span> <span class="o" style="font-weight: 600;">=></span> <span class="p">[</span><span class="sx" style="color: #d14;">qw(IO::String</span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="perl"><span class="sx" style="color: #d14;"> LWP::UserAgent</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="perl"><span class="sx" style="color: #d14;"> HTTP::Request::Common</span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="perl"><span class="sx" style="color: #d14;"> Data::Stag)</span><span class="p">],</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="perl"> <span class="o" style="font-weight: 600;">-</span><span class="nv" style="color: #008080;">requires_networking</span> <span class="o" style="font-weight: 600;">=></span> <span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="perl"></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="perl"> <span class="nv" style="color: #008080;">use_ok</span><span class="p">('</span><span class="s1" style="color: #d14;">Bio::DB::SwissProt</span><span class="p">');</span></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="perl"><span class="p">}</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Bio::DB::</span><span class="nv" style="color: #008080;">SwissProt</span><span class="p">;</span></span>
</pre>
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18
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="perl"></span>
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19
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="perl"><span class="nv" style="color: #008080;">ok</span> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: #008080;">$gb</span> <span class="o" style="font-weight: 600;">=</span> <span class="nn" style="color: #555;">Bio::DB::</span><span class="nv" style="color: #008080;">SwissProt</span><span class="o" style="font-weight: 600;">-></span><span class="k" style="font-weight: 600;">new</span><span class="p">(</span><span class="o" style="font-weight: 600;">-</span><span class="nv" style="color: #008080;">retrievaltype</span> <span class="o" style="font-weight: 600;">=></span> <span class="p">'</span><span class="s1" style="color: #d14;">pipeline</span><span class="p">',</span></span>
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20
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="perl"> <span class="o" style="font-weight: 600;">-</span><span class="nv" style="color: #008080;">delay</span> <span class="o" style="font-weight: 600;">=></span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
</pre>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,6 +25,7 @@ my %expected_lengths = (</td>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="perl"><span class="k" style="font-weight: 600;">my</span> <span class="p">(</span><span class="nv" style="color: #008080;">$seq</span><span class="p">,</span> <span class="nv" style="color: #008080;">$seqio</span><span class="p">);</span></span>
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="perl"></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># keep the SKIP block to deal with intermittent fails</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="perl"><span class="nv" style="color: #008080;">SKIP:</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="perl"> <span class="nb" style="color: #0086b3;">eval</span> <span class="p">{</span><span class="nv" style="color: #008080;">$seq</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">$gb</span><span class="o" style="font-weight: 600;">-></span><span class="nv" style="color: #008080;">get_Seq_by_id</span><span class="p">('</span><span class="s1" style="color: #d14;">YNB3_YEAST</span><span class="p">');};</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="perl"> <span class="nv" style="color: #008080;">skip</span> <span class="p">"</span><span class="s2" style="color: #d14;">Couldn't connect to SwissProt with Bio::DB::SwissProt.pm. Skipping those tests</span><span class="p">",</span> <span class="mi" style="color: #099;">14</span> <span class="k" style="font-weight: 600;">if</span> <span class="vg" style="color: #008080;">$@</span><span class="p">;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -92,4 +87,6 @@ SKIP: {</td>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="perl"> <span class="nv" style="color: #008080;">like</span><span class="p">(</span><span class="nv" style="color: #008080;">$map</span><span class="o" style="font-weight: 600;">-></span><span class="p">{</span><span class="nv" style="color: #008080;">PYRC_YEAST</span><span class="p">}[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="sx" style="color: #d14;">qr/^[A-Z0-9]/</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="perl"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="perl"></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="perl"><span class="nv" style="color: #008080;">done_testing</span><span class="p">();</span></span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="perl"></span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="perl"><span class="mi" style="color: #099;">1</span><span class="p">;</span></span></pre>
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