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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/plink">Debian Med / plink</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/plink/commit/a91291fc6a7afd767d12a64a76375cfbab8439c5">a91291fc</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-05T08:27:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Let dh_auto_build pass cross tools to make
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plink/commit/848856bea1a91c7ea136fc0351ea65a7f8e598c7">848856be</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-05T08:27:33+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plink/commit/96895dc20fd781c941a704328aefc5c9c1a35d0a">96895dc2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-05T08:27:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.4.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plink/commit/3190609f0e3db8787e611301f968f989da5b43a5">3190609f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-05T08:27:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright).</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/plink/commit/7fc8822d55342a5240bc04152652d0fbb4066f66">7fc8822d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-01-05T08:32:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/plink/compare/3a3e980502e992d911f3ba11f75d10d42cd31863...7fc8822d55342a5240bc04152652d0fbb4066f66#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">plink (1.07+dfsg-3) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Helmut Grohne ]</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Fix FTCBFS: Let dh_auto_build pass cross tools to make. (Closes: #948133)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * debhelper-compat 12</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Standards-Version: 4.4.1</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Remove obsolete field Name from debian/upstream/metadata (already</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> present in machine-readable debian/copyright).</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sun, 05 Jan 2020 08:27:40 +0100</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">plink (1.07+dfsg-2) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> * cme fix dpkg-control</span>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/plink/compare/3a3e980502e992d911f3ba11f75d10d42cd31863...7fc8822d55342a5240bc04152652d0fbb4066f66#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/plink/compare/3a3e980502e992d911f3ba11f75d10d42cd31863...7fc8822d55342a5240bc04152652d0fbb4066f66#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,9 +6,9 @@ Uploaders: Steffen Moeller <moeller@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> Dylan Aïssi <bob.dybian@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 11</span>),</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 12</span>),</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> zlib1g-dev</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2</span>.1</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">4</span>.1</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/plink</span>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/plink.git</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Homepage: http://zzz.bwh.harvard.edu/plink/</span>
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<a href="https://salsa.debian.org/med-team/plink/compare/3a3e980502e992d911f3ba11f75d10d42cd31863...7fc8822d55342a5240bc04152652d0fbb4066f66#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,7 +21,7 @@ override_dh_auto_clean:</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> rm -f plink</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> <span class="idiff left right">$(MAKE)</span> CXXFLAGS='$(CXXFLAGS)' FORCE_DYNAMIC=1</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> <span class="idiff left right">dh_auto_build --</span> CXXFLAGS='$(CXXFLAGS)' FORCE_DYNAMIC=1</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">override_dh_installexamples:</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> dh_installexamples</span>
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<a href="https://salsa.debian.org/med-team/plink/compare/3a3e980502e992d911f3ba11f75d10d42cd31863...7fc8822d55342a5240bc04152652d0fbb4066f66#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Name: plink</span>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"><span class="idiff left right"> </span>- Author: ></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> <span class="idiff left right"> </span>Shaun Purcell and Benjamin Neale and Kathe Todd-Brown and Lori</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> <span class="idiff left right"> </span>Thomas and Manuel A. R. Ferreira and David Bender and Julian Maller</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> <span class="idiff left right"> </span>and Pamela Sklar and Paul I. W. de Bakker and Mark J. Daly and Pak</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> <span class="idiff left right"> </span>C. Sham</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> <span class="idiff left right"> </span>Title: ></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> <span class="idiff left right"> </span>PLINK: a toolset for whole-genome association and population-based</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> <span class="idiff left right"> </span>linkage analysis</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> <span class="idiff left right"> </span>Journal: American Journal of Human Genetics</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> <span class="idiff left right"> </span>Volume: 81</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right"> </span>Number: 3</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> <span class="idiff left right"> </span>Pages: 559-75</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> <span class="idiff left right"> </span>Year: 2007</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> <span class="idiff left right"> </span>PMID: 17701901</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> <span class="idiff left right"> </span>URL: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1950838/</span>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> <span class="idiff left right"> </span>DOI: 10.1086/519795</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">- Author: ></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Shaun Purcell and Benjamin Neale and Kathe Todd-Brown and Lori</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Thomas and Manuel A. R. Ferreira and David Bender and Julian Maller</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> and Pamela Sklar and Paul I. W. de Bakker and Mark J. Daly and Pak</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> C. Sham</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> Title: ></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> PLINK: a toolset for whole-genome association and population-based</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> linkage analysis</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> Journal: American Journal of Human Genetics</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> Volume: 81</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> Number: 3</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> Pages: 559-75</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> Year: 2007</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> PMID: 17701901</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> URL: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1950838/</span>
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<td class="diff-line-num new old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> DOI: 10.1086/519795</span>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
19
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Registry:</span>
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<td class="diff-line-num old old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
20
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"><span class="idiff left right"> </span>- Name: OMICtools</span>
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<td class="diff-line-num old old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
21
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> <span class="idiff left right"> </span>Entry: OMICS_00206</span>
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<td class="diff-line-num old old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
22
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"><span class="idiff left right"> </span>- Name: bio.tools</span>
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<td class="diff-line-num old old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
23
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> <span class="idiff left right"> </span>Entry: PLINK</span>
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<td class="diff-line-num old old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
24
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"><span class="idiff left right"> </span>- Name: SciCrunch</span>
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<td class="diff-line-num old old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
25
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> <span class="idiff left right"> </span>Entry: SCR_001757</span>
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<td class="diff-line-num old old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
26
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"><span class="idiff left right"> </span>- Name: conda:bioconda</span>
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<td class="diff-line-num old old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> <span class="idiff left right"> </span>Entry: plink</span></pre>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">- Name: OMICtools</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> Entry: OMICS_00206</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">- Name: bio.tools</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> Entry: PLINK</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">- Name: SciCrunch</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> Entry: SCR_001757</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">- Name: conda:bioconda</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> Entry: plink</span></pre>
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