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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/gubbins">Debian Med / gubbins</a>
</h3>
<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/commit/006a9a5e383fd158aeb4f7acd9b6022565296ffd">006a9a5e</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-01-08T13:29:20+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Don't point to file with .py ending that does not exist
</pre>
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<h4>1 changed file:</h4>
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<li class="file-stats">
<a href="#3a2470b33ad88916745979351435ccba0d2f1100">
debian/patches/gubbins_exe_in_usr_lib.patch
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<h4>Changes:</h4>
<li id="3a2470b33ad88916745979351435ccba0d2f1100">
<a href="https://salsa.debian.org/med-team/gubbins/commit/006a9a5e383fd158aeb4f7acd9b6022565296ffd#3a2470b33ad88916745979351435ccba0d2f1100"><strong>debian/patches/gubbins_exe_in_usr_lib.patch</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,3 +18,16 @@ Index: gubbins/python/gubbins/common.py</td>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"> if utils.which(gubbins_exec) is None:</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="diff"> # Check if the Gubbins C-program is available in its source directory (for tests/Travis)</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"> gubbins_bundled_exec = os.path.abspath(os.path.join(current_directory, '../src/gubbins'))</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gh" style="color: #999;">Index: gubbins/src/main.c</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- gubbins.orig/src/main.c</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ gubbins/src/main.c</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="p">@@ -38,7 +38,7 @@</span> const char* program_name;</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> void print_usage(FILE* stream, int exit_code)</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> {</span>
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<td class="diff-line-num new new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- fprintf (stream, "This program is not supposed to be directly run. Use run_gubbins.py instead\n");</span></span>
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<td class="diff-line-num new new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fprintf (stream, "This program is not supposed to be directly run. Use run_gubbins instead\n");</span></span>
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<td class="diff-line-num new new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> fprintf (stream, "Usage: %s [options] alignment_file\n", program_name);</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> fprintf (stream, "Version: %s\n", PACKAGE_VERSION);</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> fprintf (stream,</span></pre>
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