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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/gubbins">Debian Med / gubbins</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/commit/292f4685c23106a642c39a4c372ca71b9c397b67">292f4685</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-01-08T12:59:28+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.0</pre>
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<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
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<a href="#67aca61d38c2e9c5a1b45074a287d77e649ab68b">
<span class="deleted-file">
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depcomp
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<a href="#2c5ca9d9e1d8c40b66ed0d78a291a9ef83e64760">
example_data/PMEN1/README.md
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<a href="#58db356d9e8caa509e2c0b01ad695756114c19e9">
install_dependencies.sh
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ltmain.sh
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missing
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<a href="#9477571eb9133d73d188c6af704cf012ac5b08b2">
python/gubbins/PreProcessFasta.py
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python/gubbins/RAxMLExecutable.py
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python/gubbins/RAxMLSequenceReconstruction.py
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<a href="#aaaba74cad9a3f815206ba8bf91e26f24eb5a22a">
python/gubbins/common.py
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python/gubbins/tests/__init__.py
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python/gubbins/tests/data/concatenate_fasta_files.aln.expected
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<a href="#896ad118b79e3be2daf8ec933708786afe7e8547">
python/gubbins/tests/data/raxml_sequence_reconstruction/expected_rooted_tree.newick
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python/gubbins/tests/data/expected_rooted_tree.newick
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python/gubbins/tests/data/further_alignment.aln
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python/gubbins/tests/data/iqtree_ancestral.fasta.expected
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python/gubbins/tests/data/iqtree_ancestral.state
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python/gubbins/tests/data/raxml_ancestral.fasta.expected
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python/gubbins/tests/data/raxml_ancestral.state
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python/gubbins/tests/data/raxml_sequence_reconstruction/1.fasta
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python/gubbins/tests/data/raxml_sequence_reconstruction/2.fasta
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python/gubbins/tests/data/raxml_sequence_reconstruction/expected_ancestor_sequence_from_raxml
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python/gubbins/tests/data/raxml_sequence_reconstruction/expected_combined_1_2.fasta
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python/gubbins/tests/data/raxml_sequence_reconstruction/expected_marginalAncestralStates.fasta
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python/gubbins/tests/data/raxml_sequence_reconstruction/input_alignment.fasta
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python/gubbins/tests/data/raxml_sequence_reconstruction/raw_marginalAncestralStates.phylip
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python/gubbins/tests/data/small_alignment.aln
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<a href="#030d3a959ffe8d8d2ef9dbc239a07a76bb424a52">
python/gubbins/tests/data/raxml_sequence_reconstruction/unrooted_tree.newick
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python/gubbins/tests/data/unrooted_tree.newick
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<a href="#4b5db523ca4623b4b4ec46672c8f2d69703150ba">
python/gubbins/tests/test_alignment_python_methods.py
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<h5>The diff was not included because it is too large.</h5>
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