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<h3>
Matúš Kalaš pushed to branch master
at <a href="https://salsa.debian.org/med-team/augustus">Debian Med / augustus</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/augustus/commit/92b8461fdce9559c0a2f50e874e7969df715e7c3">92b8461f</a></strong>
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<span>by Matúš Kalaš</span>
<i>at 2020-01-08T17:40:38+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add citations</pre>
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<h4>1 changed file:</h4>
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<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<h4>Changes:</h4>
<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/augustus/commit/92b8461fdce9559c0a2f50e874e7969df715e7c3#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext"> Author: M. Stanke and O. Schöffmann and B. Morgenstern and S. Waack</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> Title: ></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> Gene prediction in eukaryotes with a generalized hidden Markov model</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> that uses hints from external sources</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> Journal: BMC Bioinformatics</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> Year: 2006</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> Volume: 7</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> Pages: 62</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> DOI: 10.1186/1471-2105-7-62</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> PMID: 16469098</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> URL: http://www.biomedcentral.com/1471-2105/7/62/abstract</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> eprint: http://www.biomedcentral.com/content/pdf/1471-2105-7-62.pdf</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> - Author: Stefanie König and Lars Romoth and Lizzy Gerischer and Mario Stanke</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Title: "Simultaneous gene finding in multiple genomes"</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Journal: Bioinformatics</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Year: 2016</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> Month: 11</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> Volume: 32</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> Number: 22</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> Pages: 3388-3395</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> DOI: 10.1093/bioinformatics/btw494</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> PMID: 27466621</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> eprint: https://academic.oup.com/bioinformatics/article-pdf/32/22/3388/24342995/btw494.pdf</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> - Author: Oliver Keller and Martin Kollmar and Mario Stanke and Stephan Waack</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> Title: ></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> "A novel hybrid gene prediction method employing protein</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> multiple sequence alignments"</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> Year: 2011</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> Journal: Bioinformatics</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> Volume: 27</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> Number: 6</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> Month: 3</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> Pages: 757–763</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> DOI: 10.1093/bioinformatics/btr010</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> eprint: https://academic.oup.com/bioinformatics/article-pdf/27/6/757/16902282/btr010.pdf</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> PMID: 21216780</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> - Author: ></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> Mario Stanke and Mark Diekhans and Robert Baertsch and David Haussler</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> Title: ></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> "Using native and syntenically mapped cDNA alignments to improve de novo</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> gene finding"</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> Year: 2008</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> Journal: Bioinformatics</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> Volume: 24</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> Number: 5</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> Month: 3</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> Pages: 637–644</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> DOI: 10.1093/bioinformatics/btn013</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> eprint: https://academic.oup.com/bioinformatics/article-pdf/24/5/637/16886735/btn013.pdf</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> PMID: 18218656</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> - Author: ></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> Mario Stanke and Oliver Schöffmann and Burkhard Morgenstern</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> and Stephan Waack</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> Title: ></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> Gene prediction in eukaryotes with a generalized hidden Markov model</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> that uses hints from external sources</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> Journal: BMC Bioinformatics</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> Year: 2006</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> Month: 2</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> Volume: 7</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> Pages: 62</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> DOI: 10.1186/1471-2105-7-62</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> PMID: 16469098</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> eprint: https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-7-62</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> - Author: Mario Stanke and Stephan Waack</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> Title: Gene Prediction with a Hidden-Markov Model and a new Intron Submodel</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> Year: 2003</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> Journal: Bioinformatics</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> Volume: 19</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> Number: Suppl. 2</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> Month: 9</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> Pages: ii215–ii225</span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> eprint: https://academic.oup.com/bioinformatics/article-pdf/19/suppl_2/ii215/435390/btg1080.pdf</span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> PMID: 14534192</span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> DOI: 10.1093/bioinformatics/btg1080</span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> - Author: Mario Stanke</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> Year: 2003</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> Title: "Gene Prediction with a Hidden Markov Model"</span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> Volume: Ph.D. dissertation</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> Publisher: Universität Göttingen</span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> URL: http://ediss.uni-goettingen.de/handle/11858/00-1735-0000-0006-B3F8-4</span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> HDL: 11858/00-1735-0000-0006-B3F8-4</span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> eprint: http://ediss.uni-goettingen.de/bitstream/handle/11858/00-1735-0000-0006-B3F8-4/stanke.pdf</span>
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14
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext">Registry:</span>
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15
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74
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> - Name: SciCrunch</span>
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16
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> Entry: SCR_008417</span>
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