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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/gubbins">Debian Med / gubbins</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/commit/292f4685c23106a642c39a4c372ca71b9c397b67">292f4685</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-01-08T12:59:28+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/commit/a29d75835f7deece66ddb4cf3075cefcc7bf7f19">a29d7583</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-01-08T12:59:28+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/commit/501c00f0b6b0eb774bb9b9d26f5e9363b574c93c">501c00f0</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-01-08T12:59:30+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.4.0'
Update to upstream version '2.4.0'
with Debian dir 8b30a0c7cd76c1b43e15270e26e8206ed9369833</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/commit/c73549ce1bd801e26a02b73b37ee2d32d5788431">c73549ce</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-01-08T13:17:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload of 2.4
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
</a>
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
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<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#46177b436c3a0564addad969b1ab888c6d6618a5">
<span class="deleted-file">
−
debian/patches/disable_test.patch
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<li class="file-stats">
<a href="#60c7f35251e97e6e084e0ac6c78e80addff1beb9">
debian/patches/do_not_handle_python_by_upstream_build_system.patch
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<li class="file-stats">
<a href="#3a2470b33ad88916745979351435ccba0d2f1100">
debian/patches/gubbins_exe_in_usr_lib.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<a href="#67aca61d38c2e9c5a1b45074a287d77e649ab68b">
<span class="deleted-file">
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depcomp
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<a href="#2c5ca9d9e1d8c40b66ed0d78a291a9ef83e64760">
example_data/PMEN1/README.md
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<a href="#58db356d9e8caa509e2c0b01ad695756114c19e9">
install_dependencies.sh
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ltmain.sh
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missing
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<a href="#9477571eb9133d73d188c6af704cf012ac5b08b2">
python/gubbins/PreProcessFasta.py
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<a href="#6e4f89d8548b2971160755435f4a609e8229d659">
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python/gubbins/RAxMLExecutable.py
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python/gubbins/RAxMLSequenceReconstruction.py
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<li class="file-stats">
<a href="#aaaba74cad9a3f815206ba8bf91e26f24eb5a22a">
python/gubbins/common.py
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<a href="#402b53dd04550669c8f0f71d3a722cdffe5ffaf5">
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python/gubbins/tests/__init__.py
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python/gubbins/tests/data/concatenate_fasta_files.aln.expected
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<li class="file-stats">
<a href="#896ad118b79e3be2daf8ec933708786afe7e8547">
python/gubbins/tests/data/raxml_sequence_reconstruction/expected_rooted_tree.newick
→
python/gubbins/tests/data/expected_rooted_tree.newick
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<a href="#7b17f69a5053a02669570de1e7695c121bfdcdb2">
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python/gubbins/tests/data/further_alignment.aln
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<a href="#98310dbf304e0901b3d663f5c390015b20c58c09">
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python/gubbins/tests/data/iqtree_ancestral.fasta.expected
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python/gubbins/tests/data/iqtree_ancestral.state
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python/gubbins/tests/data/raxml_ancestral.fasta.expected
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python/gubbins/tests/data/raxml_ancestral.state
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python/gubbins/tests/data/raxml_sequence_reconstruction/1.fasta
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python/gubbins/tests/data/raxml_sequence_reconstruction/2.fasta
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python/gubbins/tests/data/raxml_sequence_reconstruction/expected_ancestor_sequence_from_raxml
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python/gubbins/tests/data/raxml_sequence_reconstruction/expected_combined_1_2.fasta
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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