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<h3>
Matúš Kalaš pushed to branch master
at <a href="https://salsa.debian.org/med-team/augustus">Debian Med / augustus</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/augustus/commit/e5dcd0077327f736ef6da1c619af2d697c088ae0">e5dcd007</a></strong>
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<span>by Matúš Kalaš</span>
<i>at 2020-01-08T16:32:10+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add EDAM
Based on https://bio.tools/augustus
The "training_the_parameters_for_individual_species_of_interest" operation does not have a matching EDAM concept (in bio.tools this is "I don't know", auto-substituted by the top-level concept "Operation")</pre>
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<h4>1 changed file:</h4>
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<a href="#e3df809cf64feb70e765191317d121ada03a1a67">
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+
debian/upstream/edam
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<h4>Changes:</h4>
<li id="e3df809cf64feb70e765191317d121ada03a1a67">
<a href="https://salsa.debian.org/med-team/augustus/commit/e5dcd0077327f736ef6da1c619af2d697c088ae0#e3df809cf64feb70e765191317d121ada03a1a67"><strong>debian/upstream/edam</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">---</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">ontology: EDAM (1.23)</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">topic:</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> - Gene transcripts</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> - Gene and protein families</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">scopes:</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> - name: summary</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> function:</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> - Gene prediction</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> - name: gene_prediction_using_experimental_evidence_(gene_products)</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> function:</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> - Gene prediction</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> - name: ab-initio_gene_prediction</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> function:</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> - Ab-initio gene prediction</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> - name: multi-genome_annotation_(simultaneous_gene_finding_in_multiple_genomes)</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> function:</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> - Homology-based gene prediction</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> - name: gene_prediction_using_protein_sequence_profiles</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> function:</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> - Homology-based gene prediction</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> - name: training_the_parameters_for_individual_species_of_interest</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> function:</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> - Optimisation and refinement</span></pre>
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